More than 300 homologs were found in PanDaTox collection
for query gene Mchl_3034 on replicon NC_011757
Organism: Methylobacterium chloromethanicum CM4



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011757  Mchl_3034  short-chain dehydrogenase/reductase SDR  100 
 
 
253 aa  502  1e-141  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.698744 
 
 
-
 
NC_010172  Mext_2806  short-chain dehydrogenase/reductase SDR  98.02 
 
 
253 aa  489  1e-137  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3840  short-chain dehydrogenase/reductase SDR  53.17 
 
 
254 aa  257  2e-67  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0095  putative short chain dehydrogenase  53.97 
 
 
254 aa  249  4e-65  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.750807 
 
 
-
 
NC_009074  BURPS668_3878  short chain dehydrogenase/reductase family oxidoreductase  53.57 
 
 
252 aa  232  5e-60  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2881  short chain dehydrogenase/reductase family oxidoreductase  53.17 
 
 
252 aa  227  2e-58  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3094  short chain dehydrogenase/reductase family oxidoreductase  53.17 
 
 
252 aa  227  2e-58  Burkholderia mallei NCTC 10247  Bacteria  normal  0.380527  n/a   
 
 
-
 
NC_009076  BURPS1106A_3960  short chain dehydrogenase/reductase family oxidoreductase  53.17 
 
 
252 aa  227  2e-58  Burkholderia pseudomallei 1106a  Bacteria  normal  0.255789  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3456  short chain dehydrogenase/reductase family oxidoreductase  53.17 
 
 
252 aa  227  2e-58  Burkholderia mallei SAVP1  Bacteria  normal  0.0629788  n/a   
 
 
-
 
NC_008836  BMA10229_A1663  short chain dehydrogenase/reductase family oxidoreductase  53.17 
 
 
252 aa  227  2e-58  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0100  short chain dehydrogenase/reductase family oxidoreductase  53.17 
 
 
273 aa  226  3e-58  Burkholderia pseudomallei 1710b  Bacteria  normal  0.231003  n/a   
 
 
-
 
NC_004578  PSPTO_1914  oxidoreductase, short chain dehydrogenase/reductase family  42.5 
 
 
240 aa  195  7e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.176962  n/a   
 
 
-
 
NC_010506  Swoo_1668  short-chain dehydrogenase/reductase SDR  41.39 
 
 
251 aa  178  5.999999999999999e-44  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4285  short chain dehydrogenase/reductase family oxidoreductase  40.71 
 
 
249 aa  169  3e-41  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00989  3-oxoacyl- reductase  40.82 
 
 
257 aa  166  4e-40  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_06177  3-oxoacyl- reductase  40.82 
 
 
257 aa  166  4e-40  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0653597  n/a   
 
 
-
 
NC_010717  PXO_00988  dehydrogenase with different specificities  39.76 
 
 
250 aa  158  6e-38  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_06178  dehydrogenase with different specificities  39.76 
 
 
250 aa  158  6e-38  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0668651  n/a   
 
 
-
 
NC_010002  Daci_0613  short-chain dehydrogenase/reductase SDR  41.22 
 
 
253 aa  154  1e-36  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2643  short-chain dehydrogenase/reductase SDR  40.98 
 
 
256 aa  152  5.9999999999999996e-36  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1326  short-chain dehydrogenase/reductase SDR  33.33 
 
 
253 aa  149  5e-35  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2644  short-chain dehydrogenase/reductase SDR  37.3 
 
 
247 aa  148  7e-35  Methylobacillus flagellatus KT  Bacteria  normal  0.439694  normal 
 
 
-
 
NC_011898  Ccel_1214  short-chain dehydrogenase/reductase SDR  35.34 
 
 
253 aa  145  5e-34  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3110  short-chain dehydrogenase/reductase SDR  32.11 
 
 
257 aa  141  8e-33  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0612  short-chain dehydrogenase/reductase SDR  36.21 
 
 
245 aa  141  8e-33  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6198  short-chain dehydrogenase/reductase SDR  34.57 
 
 
260 aa  139  4.999999999999999e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4926  short-chain dehydrogenase/reductase SDR  34.8 
 
 
250 aa  138  8.999999999999999e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_3366  short-chain dehydrogenase/reductase SDR  36.69 
 
 
250 aa  137  2e-31  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011369  Rleg2_1783  short-chain dehydrogenase/reductase SDR  37.25 
 
 
247 aa  135  6.0000000000000005e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185042  normal  0.0937687 
 
 
-
 
NC_010571  Oter_4331  short-chain dehydrogenase/reductase SDR  36.77 
 
 
257 aa  133  1.9999999999999998e-30  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4305  short-chain dehydrogenase/reductase SDR  32.1 
 
 
251 aa  126  4.0000000000000003e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.400321  normal 
 
 
-
 
NC_008009  Acid345_2266  short-chain dehydrogenase/reductase SDR  34.54 
 
 
244 aa  126  4.0000000000000003e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.000275266  normal 
 
 
-
 
NC_011894  Mnod_3437  short-chain dehydrogenase/reductase SDR  34.29 
 
 
262 aa  125  9e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6972  short chain dehydrogenase  38.62 
 
 
251 aa  124  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2160  Short-chain dehydrogenase/reductase  35.51 
 
 
254 aa  124  2e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010830  Aasi_0105  3-oxoacyl-(acyl-carrier-protein) reductase  34.41 
 
 
248 aa  123  4e-27  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_009049  Rsph17029_0834  short-chain dehydrogenase/reductase SDR  35.1 
 
 
254 aa  122  4e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6315  short-chain dehydrogenase/reductase SDR  34.39 
 
 
255 aa  122  5e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.24294  normal 
 
 
-
 
NC_008254  Meso_2654  short-chain dehydrogenase/reductase SDR  33.2 
 
 
254 aa  121  9e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011887  Mnod_7850  short-chain dehydrogenase/reductase SDR  36.26 
 
 
256 aa  121  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0385  short-chain dehydrogenase/reductase SDR  34.14 
 
 
244 aa  120  1.9999999999999998e-26  Methylocella silvestris BL2  Bacteria  n/a    normal  0.317025 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  35.37 
 
 
254 aa  120  1.9999999999999998e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_010002  Daci_5639  short chain dehydrogenase  33.47 
 
 
250 aa  120  1.9999999999999998e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.308131  hitchhiker  0.00207751 
 
 
-
 
NC_013440  Hoch_3498  short-chain dehydrogenase/reductase SDR  36.14 
 
 
250 aa  120  3e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.27381  normal  0.321582 
 
 
-
 
NC_010552  BamMC406_5253  short chain dehydrogenase  32.65 
 
 
250 aa  119  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2297  short-chain dehydrogenase/reductase SDR  35.6 
 
 
267 aa  119  3.9999999999999996e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0843841 
 
 
-
 
NC_013385  Adeg_0958  3-oxoacyl-(acyl-carrier-protein) reductase  34.54 
 
 
247 aa  119  3.9999999999999996e-26  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4387  short-chain dehydrogenase/reductase SDR  36 
 
 
247 aa  119  3.9999999999999996e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1853  short chain dehydrogenase  31.85 
 
 
248 aa  119  3.9999999999999996e-26  Pseudomonas putida F1  Bacteria  normal  normal  0.0255739 
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  32.39 
 
 
246 aa  119  4.9999999999999996e-26  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1575  short chain dehydrogenase  31.33 
 
 
249 aa  119  6e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011365  Gdia_2290  short-chain dehydrogenase/reductase SDR  34.94 
 
 
244 aa  118  7e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.872863 
 
 
-
 
NC_007005  Psyr_4922  short chain dehydrogenase  31.02 
 
 
248 aa  118  7e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1081  3-ketoacyl-(acyl-carrier-protein) reductase  31.71 
 
 
246 aa  118  7.999999999999999e-26  Geobacillus sp. WCH70  Bacteria  normal  0.46401  n/a   
 
 
-
 
NC_007954  Sden_3118  short-chain dehydrogenase/reductase SDR  31.98 
 
 
250 aa  118  9.999999999999999e-26  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4730  putative short-chain dehydrogenases/reductases (SDR) family protein  38.11 
 
 
260 aa  117  1.9999999999999998e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1425  short-chain dehydrogenase/reductase SDR  35.95 
 
 
258 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.315018 
 
 
-
 
NC_012850  Rleg_1601  short-chain dehydrogenase/reductase SDR  35.54 
 
 
258 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009427  Saro_3542  short-chain dehydrogenase/reductase SDR  33.47 
 
 
258 aa  117  1.9999999999999998e-25  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  31.98 
 
 
246 aa  117  1.9999999999999998e-25  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  35.08 
 
 
254 aa  116  3e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1941  short-chain dehydrogenase/reductase SDR  31.45 
 
 
258 aa  117  3e-25  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.663609 
 
 
-
 
NC_008789  Hhal_1323  short-chain dehydrogenase/reductase SDR  35.86 
 
 
254 aa  116  3e-25  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0533  short chain dehydrogenase  35.2 
 
 
257 aa  115  5e-25  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2062  short-chain dehydrogenase/reductase SDR  34.24 
 
 
256 aa  115  5e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.624972 
 
 
-
 
NC_009667  Oant_1136  short-chain dehydrogenase/reductase SDR  34.02 
 
 
249 aa  115  5e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.399133  n/a   
 
 
-
 
NC_006349  BMAA1811  short chain dehydrogenase  37.2 
 
 
256 aa  115  6.9999999999999995e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  0.780661  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1794  short chain dehydrogenase  37.2 
 
 
256 aa  115  6.9999999999999995e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  0.503189  n/a   
 
 
-
 
NC_009079  BMA10247_A2073  short chain dehydrogenase  37.2 
 
 
256 aa  115  6.9999999999999995e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  0.844507  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0363  short chain dehydrogenase  37.2 
 
 
256 aa  115  6.9999999999999995e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0809  short chain dehydrogenase  37.2 
 
 
256 aa  115  6.9999999999999995e-25  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1100  short chain dehydrogenase  37.2 
 
 
256 aa  115  6.9999999999999995e-25  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4576  short-chain dehydrogenase/reductase SDR  33.61 
 
 
248 aa  115  7.999999999999999e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.113643 
 
 
-
 
NC_013132  Cpin_4842  short-chain dehydrogenase/reductase SDR  31.67 
 
 
249 aa  115  7.999999999999999e-25  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00384997  hitchhiker  0.000208801 
 
 
-
 
NC_009636  Smed_2462  short chain dehydrogenase  31.56 
 
 
254 aa  114  1.0000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.131471  normal 
 
 
-
 
NC_007908  Rfer_1732  3-oxoacyl-(acyl-carrier-protein) reductase  34.43 
 
 
248 aa  115  1.0000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5225  short-chain dehydrogenase/reductase SDR  37.25 
 
 
257 aa  114  1.0000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1332  short-chain dehydrogenase/reductase SDR  30.36 
 
 
250 aa  114  1.0000000000000001e-24  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4196  short chain dehydrogenase  36.29 
 
 
252 aa  114  1.0000000000000001e-24  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  32.38 
 
 
253 aa  114  1.0000000000000001e-24  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_013421  Pecwa_1440  short chain dehydrogenase  30.89 
 
 
250 aa  114  1.0000000000000001e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  0.637118  n/a   
 
 
-
 
BN001306  ANIA_09158  short chain dehydrogenase, putative (AFU_orthologue; AFUA_4G01040)  35.77 
 
 
251 aa  114  2.0000000000000002e-24  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_011059  Paes_0175  3-oxoacyl-(acyl-carrier-protein) reductase  31.56 
 
 
247 aa  113  2.0000000000000002e-24  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_1156  3-oxoacyl-(acyl-carrier-protein) reductase  31.78 
 
 
248 aa  114  2.0000000000000002e-24  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000536759  n/a   
 
 
-
 
NC_009075  BURPS668_A0458  short chain dehydrogenase  36.8 
 
 
256 aa  114  2.0000000000000002e-24  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3531  short chain dehydrogenase  32.24 
 
 
250 aa  114  2.0000000000000002e-24  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4719  short chain dehydrogenase  36.43 
 
 
252 aa  113  2.0000000000000002e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.358577 
 
 
-
 
NC_012912  Dd1591_2450  short chain dehydrogenase  28.63 
 
 
248 aa  114  2.0000000000000002e-24  Dickeya zeae Ech1591  Bacteria  decreased coverage  0.00157623  n/a   
 
 
-
 
NC_009654  Mmwyl1_1518  short chain dehydrogenase  36.07 
 
 
254 aa  114  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.570528  normal  0.0138518 
 
 
-
 
NC_008786  Veis_2074  short-chain dehydrogenase/reductase SDR  34.11 
 
 
257 aa  114  2.0000000000000002e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  decreased coverage  0.00108701 
 
 
-
 
NC_003910  CPS_1680  short chain dehydrogenase/reductase family oxidoreductase  32.39 
 
 
251 aa  113  3e-24  Colwellia psychrerythraea 34H  Bacteria  normal  0.447885  n/a   
 
 
-
 
NC_007005  Psyr_0904  Short-chain dehydrogenase/reductase SDR  31.2 
 
 
254 aa  113  3e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1584  short-chain dehydrogenase/reductase SDR  33.47 
 
 
264 aa  113  3e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.296993 
 
 
-
 
NC_007517  Gmet_2194  Short-chain dehydrogenase/reductase SDR  30.59 
 
 
255 aa  113  3e-24  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000131904  normal  0.0140674 
 
 
-
 
NC_008254  Meso_2493  short-chain dehydrogenase/reductase SDR  34.26 
 
 
253 aa  113  3e-24  Chelativorans sp. BNC1  Bacteria  normal  0.0816082  n/a   
 
 
-
 
NC_007511  Bcep18194_B1406  Short-chain dehydrogenase/reductase SDR  32.3 
 
 
251 aa  112  4.0000000000000004e-24  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007799  ECH_0669  3-oxoacyl-(acyl-carrier-protein) reductase  30.83 
 
 
247 aa  112  4.0000000000000004e-24  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.154574  n/a   
 
 
-
 
NC_009485  BBta_6893  putative 3-oxoacyl-(acyl-carrier-protein) reductase  33.88 
 
 
266 aa  112  4.0000000000000004e-24  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00227102  normal  0.0503904 
 
 
-
 
NC_011365  Gdia_2326  short-chain dehydrogenase/reductase SDR  33.88 
 
 
246 aa  112  4.0000000000000004e-24  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3738  short-chain dehydrogenase/reductase SDR  32 
 
 
252 aa  112  5e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.87063  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>