| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4305 |
|---|
| Symbol | |
|---|
| ID | 8227908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5218407 |
|---|
| End bp | 5219162 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644932152 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003088672 |
|---|
| Protein GI | 255038051 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.400321 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATGCCT TCTCGCTCCA AGGCAAAATC GCCCTCGTAA CCGGCGGCGG GAGCGGCATC
GGCTTTTACA TTGCACAATG CCTAGCGCAA GCGGGCGCCA GGCTCGTCAT CACCGGCCGC
CGTGAGGATG TTTTAAAAGA AGCATTGCCC CGACTTGGCC CCGACGCGCA TTACTTTGTA
AATGACGTGA CGGACCTGAA ATCCATCCCG GCACTGATCG AGGCGATCGA AAAGGAGGTC
GGGGAGATTG ATATTCTGGT CAACAATGCG GGTATCAATA TGAAAAAGCA CGCCGTGGAA
GTTACCGACG AGGACTTCGA CCGCATTGTG CAAACCAACC TGCACGCTGT TTTTTCGATC
ACCCGCGAAT GCGGCAAGCG CATGGTGGAA CGCAGGCGCG GCACTATCCT GATGATCACG
TCAATGGCTG CATTATACGG TATCGACCGC GTAGTGGCCT ACACCGCATC CAAATCGGCT
GTGGGCGGGA TGGTGAAGGC ATTAACGACC GAGTTCTCGC CTTATAATGT CCGCGTAAAC
GCCATTGCGC CGGGTTTTAT CGAAACACCG ATGATGCTCA CCGCCATGAA CGGCGACCCG
TCGCGCCGCG ATAAAGCGAT GGACCGCACG CCGATGGGAA CCTGGGGCAA GCCAGACGAT
ATCGGCTGGG CGGCCGTGTT CCTCAGCTCG GAAGCCGCGA AGTTCATTAC GGGTGTTACC
CTGCCGGTGG ACGGAGGAAA TTCCATCGGA TTTTAG
|
|---|
| Protein sequence | MNAFSLQGKI ALVTGGGSGI GFYIAQCLAQ AGARLVITGR REDVLKEALP RLGPDAHYFV
NDVTDLKSIP ALIEAIEKEV GEIDILVNNA GINMKKHAVE VTDEDFDRIV QTNLHAVFSI
TRECGKRMVE RRRGTILMIT SMAALYGIDR VVAYTASKSA VGGMVKALTT EFSPYNVRVN
AIAPGFIETP MMLTAMNGDP SRRDKAMDRT PMGTWGKPDD IGWAAVFLSS EAAKFITGVT
LPVDGGNSIG F
|
|---|
| |