| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3498 |
|---|
| Symbol | |
|---|
| ID | 8545887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 4825885 |
|---|
| End bp | 4826637 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 646388166 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003267893 |
|---|
| Protein GI | 262196684 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.27381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.321582 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGAC TACAGGGCAA GATCGCACTG ATCACGGGCG GCACCACGGG CATCGGCCTG
GCCACGGCCG CGCGCTTCGC CGACGAGGGC GCCACCGTGG TGGTCACCGG CCGCAACCCC
GAGACCCTGG CCGCAGCCCA GACGACGCTG GGCGAGCGCG CCGAGGTGGT GCGCGCCGAC
GTCGCCGAGC TGGCCGACAC CGACGCGCTC ATGGCGCACA TGCGCGAGCG CCACGGCCGC
ATCGACGTGC TCTTCGCCAA CGCCGGCGTG CTGCAGATGA CGCCGGCCGC CGCGGTCGAT
GAGGCGCTCT TCGACCACCT GTTCAACGTC AACGTCAAGG GCGCCTTCTT CACCGTCCAG
AAGGCGCTCG AGCTGCTCTC CGACGGCGCC TCGGTGCTGT TCAACGGCAG CGTGGTCGCC
CGCGTCGGCT ACCCGGGCAT GAGCGTGTAC GCGGCTACCA AGGCGGCGCT GGCGGCGCTG
ACGCGCTCGC TCGCGGCCGA GCTGGTCGGG CGCGGCATCC GCGTCAACGC GATCACGCCG
GGCACCACCG AGACCCCGAT GCTGCTCAAG CTGGGGATGC CCGAGGACCG CAGCGCGCAC
CGCGCGCTGG CCGAGACGCA GCCGCTCAAG CGCCTGGCCA GCGCCGAGGA CGTCGCCAAC
CTGGCCCTGT TTCTGGCCTC GGACGAGTCG GCCTACATCA CCGGCGAGGA CATCTGCATC
GACGGCGGCA AGGAAACCCT GAGGACGCTG TGA
|
|---|
| Protein sequence | MNRLQGKIAL ITGGTTGIGL ATAARFADEG ATVVVTGRNP ETLAAAQTTL GERAEVVRAD
VAELADTDAL MAHMRERHGR IDVLFANAGV LQMTPAAAVD EALFDHLFNV NVKGAFFTVQ
KALELLSDGA SVLFNGSVVA RVGYPGMSVY AATKAALAAL TRSLAAELVG RGIRVNAITP
GTTETPMLLK LGMPEDRSAH RALAETQPLK RLASAEDVAN LALFLASDES AYITGEDICI
DGGKETLRTL
|
|---|
| |