More than 300 homologs were found in PanDaTox collection
for query gene Sden_3118 on replicon NC_007954
Organism: Shewanella denitrificans OS217



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_3118  short-chain dehydrogenase/reductase SDR  100 
 
 
250 aa  508  1e-143  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1332  short-chain dehydrogenase/reductase SDR  71.2 
 
 
250 aa  369  1e-101  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1326  short-chain dehydrogenase/reductase SDR  42.17 
 
 
253 aa  194  1e-48  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3110  short-chain dehydrogenase/reductase SDR  40.96 
 
 
257 aa  191  9e-48  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1914  oxidoreductase, short chain dehydrogenase/reductase family  37.34 
 
 
240 aa  152  5e-36  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.176962  n/a   
 
 
-
 
NC_011898  Ccel_1214  short-chain dehydrogenase/reductase SDR  37.4 
 
 
253 aa  145  5e-34  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1668  short-chain dehydrogenase/reductase SDR  37.05 
 
 
251 aa  144  2e-33  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4285  short chain dehydrogenase/reductase family oxidoreductase  37.25 
 
 
249 aa  134  9.999999999999999e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0612  short-chain dehydrogenase/reductase SDR  36.18 
 
 
245 aa  132  6.999999999999999e-30  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2644  short-chain dehydrogenase/reductase SDR  36.33 
 
 
247 aa  131  7.999999999999999e-30  Methylobacillus flagellatus KT  Bacteria  normal  0.439694  normal 
 
 
-
 
NC_010681  Bphyt_3840  short-chain dehydrogenase/reductase SDR  36.29 
 
 
254 aa  128  8.000000000000001e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00989  3-oxoacyl- reductase  35.34 
 
 
257 aa  121  9.999999999999999e-27  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_06177  3-oxoacyl- reductase  35.34 
 
 
257 aa  121  9.999999999999999e-27  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0653597  n/a   
 
 
-
 
NC_010717  PXO_06178  dehydrogenase with different specificities  33.06 
 
 
250 aa  120  1.9999999999999998e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0668651  n/a   
 
 
-
 
NC_010717  PXO_00988  dehydrogenase with different specificities  33.06 
 
 
250 aa  120  1.9999999999999998e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1526  3-oxoacyl-(acyl-carrier-protein) reductase  35.37 
 
 
249 aa  119  3.9999999999999996e-26  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0095  putative short chain dehydrogenase  35.48 
 
 
254 aa  118  7e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.750807 
 
 
-
 
NC_011757  Mchl_3034  short-chain dehydrogenase/reductase SDR  31.98 
 
 
253 aa  118  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.698744 
 
 
-
 
NC_011666  Msil_3366  short-chain dehydrogenase/reductase SDR  32.55 
 
 
250 aa  115  8.999999999999998e-25  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_4842  short-chain dehydrogenase/reductase SDR  30.92 
 
 
249 aa  113  3e-24  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00384997  hitchhiker  0.000208801 
 
 
-
 
NC_010172  Mext_2806  short-chain dehydrogenase/reductase SDR  31.98 
 
 
253 aa  112  4.0000000000000004e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2643  short-chain dehydrogenase/reductase SDR  36.63 
 
 
256 aa  112  4.0000000000000004e-24  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_002978  WD0650  3-oxoacyl-(acyl-carrier-protein) reductase  32.64 
 
 
244 aa  112  6e-24  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  0.280666  n/a   
 
 
-
 
NC_010320  Teth514_1808  short-chain dehydrogenase/reductase SDR  31.08 
 
 
245 aa  111  9e-24  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1575  short chain dehydrogenase  32.94 
 
 
249 aa  111  9e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_7068  SDR family dehydrogenase/reductase  30.12 
 
 
257 aa  110  2.0000000000000002e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.894165 
 
 
-
 
NC_013093  Amir_5135  3-ketoacyl-(acyl-carrier-protein) reductase  33.86 
 
 
251 aa  109  3e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.971494  n/a   
 
 
-
 
NC_007517  Gmet_2194  Short-chain dehydrogenase/reductase SDR  30.12 
 
 
255 aa  109  4.0000000000000004e-23  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000131904  normal  0.0140674 
 
 
-
 
NC_007952  Bxe_B1270  Short-chain dehydrogenase  32.03 
 
 
248 aa  108  7.000000000000001e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0738  short-chain dehydrogenase/reductase SDR  34.24 
 
 
249 aa  108  7.000000000000001e-23  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.964587  n/a   
 
 
-
 
NC_009074  BURPS668_3878  short chain dehydrogenase/reductase family oxidoreductase  33.88 
 
 
252 aa  108  7.000000000000001e-23  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0131  3-oxoacyl-(acyl-carrier-protein) reductase  31.33 
 
 
245 aa  108  1e-22  Chlorobium luteolum DSM 273  Bacteria  normal  0.120855  normal 
 
 
-
 
NC_007354  Ecaj_0374  3-oxoacyl-[acyl-carrier-protein] reductase  30.65 
 
 
244 aa  107  2e-22  Ehrlichia canis str. Jake  Bacteria  normal  0.333975  n/a   
 
 
-
 
NC_010002  Daci_0613  short-chain dehydrogenase/reductase SDR  35.92 
 
 
253 aa  107  2e-22  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2914  short chain dehydrogenase  30.43 
 
 
255 aa  107  2e-22  Trichodesmium erythraeum IMS101  Bacteria  normal  0.892644  normal  0.135282 
 
 
-
 
NC_006348  BMA2881  short chain dehydrogenase/reductase family oxidoreductase  33.88 
 
 
252 aa  106  3e-22  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3094  short chain dehydrogenase/reductase family oxidoreductase  33.88 
 
 
252 aa  106  3e-22  Burkholderia mallei NCTC 10247  Bacteria  normal  0.380527  n/a   
 
 
-
 
NC_009076  BURPS1106A_3960  short chain dehydrogenase/reductase family oxidoreductase  33.88 
 
 
252 aa  106  3e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  0.255789  n/a   
 
 
-
 
NC_008639  Cpha266_2492  3-oxoacyl-[acyl-carrier-protein] reductase  30.92 
 
 
245 aa  106  3e-22  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3456  short chain dehydrogenase/reductase family oxidoreductase  33.88 
 
 
252 aa  106  3e-22  Burkholderia mallei SAVP1  Bacteria  normal  0.0629788  n/a   
 
 
-
 
NC_008836  BMA10229_A1663  short chain dehydrogenase/reductase family oxidoreductase  33.88 
 
 
252 aa  106  3e-22  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0100  short chain dehydrogenase/reductase family oxidoreductase  33.88 
 
 
273 aa  106  4e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  0.231003  n/a   
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  31.25 
 
 
253 aa  105  7e-22  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_014165  Tbis_1608  short-chain dehydrogenase/reductase SDR  33.47 
 
 
250 aa  105  8e-22  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2297  short-chain dehydrogenase/reductase SDR  33.86 
 
 
267 aa  104  1e-21  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0843841 
 
 
-
 
NC_007643  Rru_A0416  3-oxoacyl-[acyl-carrier-protein] reductase  34.82 
 
 
245 aa  105  1e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4002  short-chain dehydrogenase/reductase SDR  32.68 
 
 
261 aa  104  1e-21  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_2290  short-chain dehydrogenase/reductase SDR  30.52 
 
 
244 aa  104  1e-21  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.872863 
 
 
-
 
NC_008228  Patl_3071  short-chain dehydrogenase/reductase SDR  31.4 
 
 
241 aa  104  1e-21  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.362756  n/a   
 
 
-
 
NC_011666  Msil_0385  short-chain dehydrogenase/reductase SDR  31.98 
 
 
244 aa  104  1e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  0.317025 
 
 
-
 
NC_011898  Ccel_0684  3-oxoacyl-(acyl-carrier-protein) reductase  31.47 
 
 
245 aa  104  2e-21  Clostridium cellulolyticum H10  Bacteria  normal  0.015461  n/a   
 
 
-
 
NC_013131  Caci_1150  3-ketoacyl-(acyl-carrier-protein) reductase  33.73 
 
 
256 aa  104  2e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2473  short-chain dehydrogenase/reductase SDR  28.46 
 
 
256 aa  103  3e-21  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2371  short-chain dehydrogenase/reductase SDR  31.84 
 
 
244 aa  103  3e-21  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1662  3-oxoacyl-(acyl-carrier-protein) reductase  30.52 
 
 
245 aa  102  6e-21  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2395  short-chain dehydrogenase/reductase SDR  34.25 
 
 
264 aa  102  8e-21  Gordonia bronchialis DSM 43247  Bacteria  normal  0.691642  n/a   
 
 
-
 
NC_008391  Bamb_3841  short-chain dehydrogenase/reductase SDR  30.98 
 
 
249 aa  101  9e-21  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.650053 
 
 
-
 
NC_012560  Avin_22070  short chain dehydrogenase  31.47 
 
 
252 aa  101  1e-20  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5965  short-chain dehydrogenase/reductase SDR  33.2 
 
 
250 aa  101  1e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.443482  normal 
 
 
-
 
NC_008009  Acid345_2266  short-chain dehydrogenase/reductase SDR  30.92 
 
 
244 aa  101  1e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.000275266  normal 
 
 
-
 
NC_008009  Acid345_3738  short-chain dehydrogenase/reductase SDR  33.86 
 
 
252 aa  101  1e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.87063  normal 
 
 
-
 
NC_013946  Mrub_2554  short-chain dehydrogenase/reductase SDR  32.54 
 
 
258 aa  101  1e-20  Meiothermus ruber DSM 1279  Bacteria  normal  0.465274  normal 
 
 
-
 
NC_013165  Shel_01070  3-oxoacyl-(acyl-carrier-protein) reductase  32.66 
 
 
238 aa  101  1e-20  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.256883 
 
 
-
 
NC_011004  Rpal_4233  short-chain dehydrogenase/reductase SDR  30.52 
 
 
257 aa  101  1e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3594  short-chain dehydrogenase/reductase SDR  29.48 
 
 
261 aa  100  1e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.806821  normal  0.214566 
 
 
-
 
NC_007333  Tfu_1682  3-ketoacyl-(acyl-carrier-protein) reductase  31.2 
 
 
252 aa  100  2e-20  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  30.59 
 
 
246 aa  100  2e-20  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_009784  VIBHAR_06461  3-oxoacyl-(acyl carrier protein) reductase  32.11 
 
 
239 aa  100  2e-20  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  30.59 
 
 
246 aa  100  2e-20  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1751  Short-chain dehydrogenase/reductase SDR  28.92 
 
 
257 aa  100  2e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0168825 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  32.65 
 
 
261 aa  100  2e-20  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3548  short-chain dehydrogenase/reductase SDR  29.72 
 
 
257 aa  100  2e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5327  short-chain dehydrogenase/reductase SDR  31.64 
 
 
248 aa  100  2e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0136754  normal 
 
 
-
 
NC_003910  CPS_1680  short chain dehydrogenase/reductase family oxidoreductase  33.07 
 
 
251 aa  100  3e-20  Colwellia psychrerythraea 34H  Bacteria  normal  0.447885  n/a   
 
 
-
 
NC_011894  Mnod_5444  short-chain dehydrogenase/reductase SDR  28.35 
 
 
255 aa  100  3e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.844576  n/a   
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  30.68 
 
 
269 aa  100  3e-20  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_002976  SERP0601  enoyl-(acyl carrier protein) reductase  29.26 
 
 
256 aa  99.8  4e-20  Staphylococcus epidermidis RP62A  Bacteria  normal  0.356019  n/a   
 
 
-
 
NC_002976  SERP2257  acetoin reductase  31.37 
 
 
262 aa  99.8  4e-20  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4615  short-chain dehydrogenase/reductase SDR  29.72 
 
 
247 aa  99.8  4e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.991587  normal  0.149438 
 
 
-
 
NC_013037  Dfer_4305  short-chain dehydrogenase/reductase SDR  28.98 
 
 
251 aa  99.8  4e-20  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.400321  normal 
 
 
-
 
NC_010681  Bphyt_2137  short-chain dehydrogenase/reductase SDR  33.33 
 
 
260 aa  99.8  4e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0400  3-oxoacyl-(acyl-carrier-protein) reductase  30.24 
 
 
247 aa  99.4  4e-20  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0215607  n/a   
 
 
-
 
NC_011059  Paes_0175  3-oxoacyl-(acyl-carrier-protein) reductase  30.12 
 
 
247 aa  99.4  5e-20  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_002620  TC0508  3-ketoacyl-(acyl-carrier-protein) reductase  30.89 
 
 
248 aa  99  6e-20  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16710  3-ketoacyl-(acyl-carrier-protein) reductase  32.81 
 
 
250 aa  99  6e-20  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_1136  short-chain dehydrogenase/reductase SDR  33.6 
 
 
249 aa  99.4  6e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.399133  n/a   
 
 
-
 
NC_007799  ECH_0669  3-oxoacyl-(acyl-carrier-protein) reductase  29.72 
 
 
247 aa  99  6e-20  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.154574  n/a   
 
 
-
 
NC_010511  M446_0236  short-chain dehydrogenase/reductase SDR  27.38 
 
 
255 aa  98.6  7e-20  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00815339 
 
 
-
 
NC_009427  Saro_3747  short-chain dehydrogenase/reductase SDR  29.25 
 
 
268 aa  98.6  8e-20  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_1449  acetoin reductase  30.86 
 
 
257 aa  98.6  9e-20  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.000000100161  n/a   
 
 
-
 
NC_010512  Bcenmc03_6868  short-chain dehydrogenase/reductase SDR  30.24 
 
 
260 aa  98.2  1e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0593655  normal  0.256231 
 
 
-
 
NC_013922  Nmag_3074  short-chain dehydrogenase/reductase SDR  29.15 
 
 
252 aa  98.2  1e-19  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1994  short-chain dehydrogenase/reductase SDR  28.98 
 
 
245 aa  98.2  1e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1603  3-oxoacyl-(acyl-carrier-protein) reductase  30.4 
 
 
248 aa  97.8  1e-19  Shewanella loihica PV-4  Bacteria  unclonable  0.0000000401343  decreased coverage  0.000161546 
 
 
-
 
NC_011060  Ppha_0197  3-oxoacyl-(acyl-carrier-protein) reductase  28.11 
 
 
245 aa  98.2  1e-19  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3046  short-chain dehydrogenase/reductase SDR  29.76 
 
 
252 aa  98.2  1e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1215  3-oxoacyl-[acyl-carrier-protein] reductase  30.77 
 
 
245 aa  98.2  1e-19  Maricaulis maris MCS10  Bacteria  normal  normal  0.765065 
 
 
-
 
NC_008686  Pden_1769  3-oxoacyl-(acyl-carrier-protein) reductase  29.96 
 
 
245 aa  98.2  1e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.485655 
 
 
-
 
NC_009654  Mmwyl1_1990  short-chain dehydrogenase/reductase SDR  31.08 
 
 
243 aa  98.6  1e-19  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1552  short-chain dehydrogenase/reductase SDR  29.32 
 
 
248 aa  97.1  2e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0714452  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>