Gene Pnuc_0400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0400 
Symbol 
ID5052282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp391368 
End bp392111 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content49% 
IMG OID640470551 
Product3-oxoacyl-(acyl-carrier-protein) reductase 
Protein accessionYP_001155184 
Protein GI145588587 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0215607 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCTCG ACTTAAGCGG ACAAATTGCT TTAGTAACTG GCGCATCGCG CGGAATTGGT 
CAAGCGATTG CGGATGAATT AGTGAGCTGT GGTGCAAAGG TAATCGGTAC AGCGACTTCA
GAGAGTGGGG CTAATGCTAT TAATGAGCGT TTGAAACCGT CTGGCGGAGC TGGCTTGGTG
CTCAATGTCA CTGCACCCAA TGCTTGCGAA GAGATCATCG ATCAGATCGT GAAAGAGTAT
GGCGGTATTA ATATTTTGGT TAATAACGCC GGCATCACAC GTGATAACTT ATCCATGCGT
ATGAAGGGTG ATGAATGGAC GGACGTCATT GATACCAACT TAAGCGCCGT CTTCCGTTTA
TCTCAAGCAG TAATGCGTCC CATGATGAAG GCTCGTGGTG GTCGCATTAT CAATATCACC
TCTATCGTAG GTCATATGGG AAATCCGGGG CAGGCGAACT ACGCAGCTGC AAAAGCAGGT
GTTTCTGGGA TGACGCGTGC CCTAGCCCGT GAAATCGGTA GCCGAAACAT CACAGTGAAC
TGTGTCGCCC CCGGCTTTAT TGATACCGAT ATGACCCGTG CCTTGAGTGA AGATCAGCAA
AATGCCCTAA AAGTGAACAT TCCTTTAGCG CGTTTGGGTA GCCCAGAGGA TGTAGCCCAG
GCAGTGGCCT TTTTGGCCTC TCCAGCGGCT GCCTACATTA CGGGTAATAC CCTACACGTC
AATGGCGGAC TATATTTAGC CTAA
 
Protein sequence
MNLDLSGQIA LVTGASRGIG QAIADELVSC GAKVIGTATS ESGANAINER LKPSGGAGLV 
LNVTAPNACE EIIDQIVKEY GGINILVNNA GITRDNLSMR MKGDEWTDVI DTNLSAVFRL
SQAVMRPMMK ARGGRIINIT SIVGHMGNPG QANYAAAKAG VSGMTRALAR EIGSRNITVN
CVAPGFIDTD MTRALSEDQQ NALKVNIPLA RLGSPEDVAQ AVAFLASPAA AYITGNTLHV
NGGLYLA