More than 300 homologs were found in PanDaTox collection
for query gene Cpin_5965 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_5965  short-chain dehydrogenase/reductase SDR  100 
 
 
250 aa  511  1e-144  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.443482  normal 
 
 
-
 
NC_010506  Swoo_1496  short-chain dehydrogenase/reductase SDR  59.92 
 
 
255 aa  310  2e-83  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0824  short chain dehydrogenase/reductase family oxidoreductase  60.89 
 
 
255 aa  308  5e-83  Colwellia psychrerythraea 34H  Bacteria  normal  0.394944  n/a   
 
 
-
 
NC_009831  Ssed_1363  short chain dehydrogenase/reductase family oxidoreductase  59.22 
 
 
263 aa  306  2.0000000000000002e-82  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1384  short-chain dehydrogenase/reductase SDR  60.73 
 
 
257 aa  298  6e-80  Acidovorax sp. JS42  Bacteria  normal  0.981738  normal 
 
 
-
 
NC_009784  VIBHAR_07016  oxidoreductase  59.84 
 
 
256 aa  297  1e-79  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008392  Bamb_6448  short-chain dehydrogenase/reductase SDR  60 
 
 
257 aa  295  3e-79  Burkholderia ambifaria AMMD  Bacteria  normal  0.429705  normal 
 
 
-
 
NC_010557  BamMC406_6155  short-chain dehydrogenase/reductase SDR  60 
 
 
257 aa  295  3e-79  Burkholderia ambifaria MC40-6  Bacteria  normal  0.30491  normal 
 
 
-
 
NC_008345  Sfri_3600  short-chain dehydrogenase/reductase SDR  59.51 
 
 
255 aa  295  4e-79  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000312486  n/a   
 
 
-
 
NC_009665  Shew185_0859  short-chain dehydrogenase/reductase SDR  58.59 
 
 
260 aa  295  5e-79  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3480  short-chain dehydrogenase/reductase SDR  57.94 
 
 
260 aa  295  7e-79  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0882  short-chain dehydrogenase/reductase SDR  57.94 
 
 
260 aa  294  1e-78  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp2080  hypothetical protein  60.89 
 
 
254 aa  292  3e-78  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_3846  short-chain dehydrogenase/reductase SDR  57.83 
 
 
254 aa  292  4e-78  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl2070  hypothetical protein  60.48 
 
 
254 aa  290  1e-77  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_0894  short-chain dehydrogenase/reductase SDR  57.54 
 
 
260 aa  289  3e-77  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4263  oxidoreductase, short chain dehydrogenase/reductase family  49.8 
 
 
257 aa  248  6e-65  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4431  short-chain dehydrogenase/reductase SDR  50.2 
 
 
256 aa  245  4e-64  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.523417  normal 
 
 
-
 
NC_010552  BamMC406_3420  short-chain dehydrogenase/reductase SDR  49.8 
 
 
256 aa  243  1.9999999999999999e-63  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0826034  normal 
 
 
-
 
NC_008061  Bcen_4894  short-chain dehydrogenase/reductase SDR  49.8 
 
 
256 aa  243  3e-63  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3269  short-chain dehydrogenase/reductase SDR  49.8 
 
 
256 aa  243  3e-63  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.210768 
 
 
-
 
NC_008545  Bcen2424_6913  short-chain dehydrogenase/reductase SDR  49.8 
 
 
256 aa  243  3e-63  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1982  short-chain dehydrogenase/reductase SDR  49.8 
 
 
264 aa  240  2e-62  Burkholderia ambifaria AMMD  Bacteria  normal  0.473895  n/a   
 
 
-
 
NC_009656  PSPA7_0908  3-oxoacyl-(acyl-carrier-protein) reductase  47.58 
 
 
257 aa  230  2e-59  Pseudomonas aeruginosa PA7  Bacteria  normal  0.117831  n/a   
 
 
-
 
NC_008545  Bcen2424_6863  short-chain dehydrogenase/reductase SDR  49.2 
 
 
261 aa  229  5e-59  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224503  n/a   
 
 
-
 
NC_011887  Mnod_7850  short-chain dehydrogenase/reductase SDR  48.99 
 
 
256 aa  224  1e-57  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0680  short-chain dehydrogenase/reductase SDR  48.78 
 
 
255 aa  214  9.999999999999999e-55  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185948  normal 
 
 
-
 
NC_009832  Spro_4682  short-chain dehydrogenase/reductase SDR  37.5 
 
 
253 aa  164  2.0000000000000002e-39  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1531  3-oxoacyl-[acyl-carrier-protein] reductase  36.48 
 
 
249 aa  135  7.000000000000001e-31  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.356437 
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  35.25 
 
 
269 aa  130  3e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009636  Smed_2459  short-chain dehydrogenase/reductase SDR  36.21 
 
 
264 aa  130  3e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2434  short-chain dehydrogenase/reductase SDR  34.94 
 
 
252 aa  129  6e-29  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.000391653  normal  0.106705 
 
 
-
 
NC_009656  PSPA7_3225  bacilysin biosynthesis oxidoreductase BacC  33.88 
 
 
242 aa  127  2.0000000000000002e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1089  short-chain dehydrogenase/reductase SDR  37.75 
 
 
259 aa  127  2.0000000000000002e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0332234  normal 
 
 
-
 
NC_009952  Dshi_1258  short-chain dehydrogenase/reductase SDR  37.04 
 
 
247 aa  126  3e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.203668  normal 
 
 
-
 
NC_009664  Krad_0867  acetoin dehydrogenase  37.9 
 
 
279 aa  126  3e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0804666  normal  0.135585 
 
 
-
 
NC_008146  Mmcs_2623  short-chain dehydrogenase/reductase SDR  35.34 
 
 
284 aa  126  3e-28  Mycobacterium sp. MCS  Bacteria  normal  0.795257  n/a   
 
 
-
 
NC_008699  Noca_1834  short-chain dehydrogenase/reductase SDR  33.33 
 
 
257 aa  126  3e-28  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2667  short-chain dehydrogenase/reductase SDR  35.34 
 
 
284 aa  126  3e-28  Mycobacterium sp. KMS  Bacteria  normal  0.459641  normal  0.940814 
 
 
-
 
NC_009077  Mjls_2652  short-chain dehydrogenase/reductase SDR  35.34 
 
 
284 aa  126  3e-28  Mycobacterium sp. JLS  Bacteria  normal  0.690053  normal 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  36.14 
 
 
254 aa  125  5e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_012858  Rleg_6829  short-chain dehydrogenase/reductase SDR  31.98 
 
 
237 aa  125  7e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.138862 
 
 
-
 
NC_009621  Smed_6315  short-chain dehydrogenase/reductase SDR  34.54 
 
 
255 aa  124  1e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.24294  normal 
 
 
-
 
NC_011901  Tgr7_1954  short chain dehydrogenase/reductase family oxidoreductase  33.33 
 
 
250 aa  124  1e-27  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2760  short-chain dehydrogenase/reductase SDR  35.63 
 
 
256 aa  124  2e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  hitchhiker  0.0058487  n/a   
 
 
-
 
NC_008148  Rxyl_3007  short-chain dehydrogenase/reductase SDR  33.88 
 
 
252 aa  123  2e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.22334  n/a   
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  32.79 
 
 
247 aa  124  2e-27  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_008825  Mpe_A2921  dehydrogenase  33.47 
 
 
261 aa  124  2e-27  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.932836 
 
 
-
 
NC_010322  PputGB1_2282  short-chain dehydrogenase/reductase SDR  32.24 
 
 
244 aa  123  3e-27  Pseudomonas putida GB-1  Bacteria  normal  0.626733  normal  0.253561 
 
 
-
 
NC_008687  Pden_3580  short-chain dehydrogenase/reductase SDR  34.43 
 
 
252 aa  122  6e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0302  Short-chain dehydrogenase/reductase SDR  34.55 
 
 
236 aa  122  7e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0186456  normal  0.262092 
 
 
-
 
NC_013162  Coch_1303  short-chain dehydrogenase/reductase SDR  32.55 
 
 
258 aa  122  7e-27  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2366  short-chain dehydrogenase/reductase SDR  31.02 
 
 
244 aa  122  8e-27  Pseudomonas putida W619  Bacteria  normal  0.977766  normal 
 
 
-
 
NC_012791  Vapar_0079  short-chain dehydrogenase/reductase SDR  31.98 
 
 
246 aa  122  8e-27  Variovorax paradoxus S110  Bacteria  normal  0.596846  n/a   
 
 
-
 
NC_009832  Spro_1404  short-chain dehydrogenase/reductase SDR  30.68 
 
 
248 aa  121  9.999999999999999e-27  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1779  short-chain dehydrogenase/reductase SDR  34.26 
 
 
249 aa  121  9.999999999999999e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_2052  short-chain dehydrogenase/reductase SDR  32.24 
 
 
248 aa  121  9.999999999999999e-27  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2516  short-chain dehydrogenase/reductase SDR  35.6 
 
 
256 aa  121  9.999999999999999e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009338  Mflv_2071  short-chain dehydrogenase/reductase SDR  35.39 
 
 
258 aa  121  9.999999999999999e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.70228  normal  0.023925 
 
 
-
 
NC_009675  Anae109_2033  short-chain dehydrogenase/reductase SDR  34.8 
 
 
256 aa  120  1.9999999999999998e-26  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00849421 
 
 
-
 
NC_011145  AnaeK_2852  short-chain dehydrogenase/reductase SDR  36.03 
 
 
256 aa  120  1.9999999999999998e-26  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7135  short-chain dehydrogenase/reductase SDR  34 
 
 
254 aa  120  1.9999999999999998e-26  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.0065631  normal  0.440854 
 
 
-
 
NC_008782  Ajs_2046  short-chain dehydrogenase/reductase SDR  32.24 
 
 
263 aa  120  1.9999999999999998e-26  Acidovorax sp. JS42  Bacteria  decreased coverage  0.00404736  normal 
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  36.25 
 
 
261 aa  120  3e-26  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_008254  Meso_1768  3-ketoacyl-(acyl-carrier-protein) reductase NodG  33.2 
 
 
245 aa  119  3e-26  Chelativorans sp. BNC1  Bacteria  normal  0.323162  n/a   
 
 
-
 
NC_009077  Mjls_2812  short-chain dehydrogenase/reductase SDR  34.96 
 
 
255 aa  119  4.9999999999999996e-26  Mycobacterium sp. JLS  Bacteria  normal  0.199732  normal 
 
 
-
 
NC_011992  Dtpsy_1869  short-chain dehydrogenase/reductase SDR  31.84 
 
 
263 aa  119  4.9999999999999996e-26  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1156  3-oxoacyl-(acyl-carrier-protein) reductase  35.63 
 
 
248 aa  119  4.9999999999999996e-26  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000536759  n/a   
 
 
-
 
NC_009943  Dole_2662  short-chain dehydrogenase/reductase SDR  32.28 
 
 
266 aa  119  6e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.783199  n/a   
 
 
-
 
NC_008726  Mvan_4643  short-chain dehydrogenase/reductase SDR  33.33 
 
 
274 aa  119  7e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  34.96 
 
 
246 aa  118  7.999999999999999e-26  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_011661  Dtur_1771  short-chain dehydrogenase/reductase SDR  33.6 
 
 
252 aa  118  7.999999999999999e-26  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0889  short-chain dehydrogenase/reductase SDR  33.46 
 
 
266 aa  118  9.999999999999999e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.471953 
 
 
-
 
NC_008392  Bamb_6220  short-chain dehydrogenase/reductase SDR  33.47 
 
 
252 aa  117  9.999999999999999e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.621886  normal 
 
 
-
 
NC_011891  A2cp1_2944  short-chain dehydrogenase/reductase SDR  35.63 
 
 
256 aa  118  9.999999999999999e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  32.8 
 
 
258 aa  117  9.999999999999999e-26  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_012560  Avin_22070  short chain dehydrogenase  36.21 
 
 
252 aa  117  1.9999999999999998e-25  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3565  short-chain dehydrogenase/reductase SDR  35.8 
 
 
244 aa  117  1.9999999999999998e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011370  Rleg2_6280  short-chain dehydrogenase/reductase SDR  32.79 
 
 
262 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.365337 
 
 
-
 
NC_013132  Cpin_4576  short-chain dehydrogenase/reductase SDR  31.6 
 
 
244 aa  117  1.9999999999999998e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.202963  normal 
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  34.96 
 
 
246 aa  117  1.9999999999999998e-25  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1783  short-chain dehydrogenase/reductase SDR  36.03 
 
 
247 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185042  normal  0.0937687 
 
 
-
 
NC_008146  Mmcs_2785  short-chain dehydrogenase/reductase SDR  34.55 
 
 
255 aa  117  1.9999999999999998e-25  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_0297  short-chain dehydrogenase/reductase SDR  28.63 
 
 
251 aa  117  1.9999999999999998e-25  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.677514  n/a   
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  35.51 
 
 
239 aa  117  1.9999999999999998e-25  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_2829  short-chain dehydrogenase/reductase SDR  34.55 
 
 
255 aa  117  1.9999999999999998e-25  Mycobacterium sp. KMS  Bacteria  normal  0.150517  normal  0.215397 
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  31.97 
 
 
260 aa  117  1.9999999999999998e-25  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_009511  Swit_3078  short-chain dehydrogenase/reductase SDR  33.47 
 
 
255 aa  116  3e-25  Sphingomonas wittichii RW1  Bacteria  normal  0.485877  normal 
 
 
-
 
NC_010581  Bind_2090  short-chain dehydrogenase/reductase SDR  41.24 
 
 
237 aa  116  3e-25  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_0276  short-chain dehydrogenase/reductase SDR  32.68 
 
 
260 aa  116  3e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0458  3-ketoacyl-(acyl-carrier-protein) reductase  31.71 
 
 
245 aa  116  3.9999999999999997e-25  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4933  short-chain dehydrogenase/reductase SDR  32.51 
 
 
249 aa  116  3.9999999999999997e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.504822  normal 
 
 
-
 
NC_009505  BOV_0463  3-ketoacyl-(acyl-carrier-protein) reductase  31.71 
 
 
245 aa  116  3.9999999999999997e-25  Brucella ovis ATCC 25840  Bacteria  normal  0.82564  n/a   
 
 
-
 
NC_011989  Avi_1528  3-ketoacyl-(acyl-carrier-protein) reductase NodG  31.3 
 
 
245 aa  116  3.9999999999999997e-25  Agrobacterium vitis S4  Bacteria  normal  0.150562  n/a   
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  34.71 
 
 
261 aa  116  3.9999999999999997e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  30.8 
 
 
249 aa  116  3.9999999999999997e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1057  3-ketoacyl-(acyl-carrier-protein) reductase NodG  32.52 
 
 
245 aa  116  3.9999999999999997e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0775551 
 
 
-
 
NC_007974  Rmet_4614  short-chain dehydrogenase/reductase SDR  33.2 
 
 
250 aa  115  5e-25  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  30.49 
 
 
253 aa  115  5e-25  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008786  Veis_2183  short-chain dehydrogenase/reductase SDR  33.33 
 
 
244 aa  115  5e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.389501 
 
 
-
 
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