More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_3420 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010552  BamMC406_3420  short-chain dehydrogenase/reductase SDR  100 
 
 
256 aa  513  1.0000000000000001e-145  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0826034  normal 
 
 
-
 
NC_010515  Bcenmc03_4431  short-chain dehydrogenase/reductase SDR  99.22 
 
 
256 aa  509  1e-143  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.523417  normal 
 
 
-
 
NC_008061  Bcen_4894  short-chain dehydrogenase/reductase SDR  97.27 
 
 
256 aa  499  1e-140  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3269  short-chain dehydrogenase/reductase SDR  97.27 
 
 
256 aa  499  1e-140  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.210768 
 
 
-
 
NC_008545  Bcen2424_6913  short-chain dehydrogenase/reductase SDR  97.27 
 
 
256 aa  499  1e-140  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4263  oxidoreductase, short chain dehydrogenase/reductase family  80.08 
 
 
257 aa  415  9.999999999999999e-116  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1384  short-chain dehydrogenase/reductase SDR  59.68 
 
 
257 aa  315  4e-85  Acidovorax sp. JS42  Bacteria  normal  0.981738  normal 
 
 
-
 
NC_008392  Bamb_6448  short-chain dehydrogenase/reductase SDR  56.92 
 
 
257 aa  308  5e-83  Burkholderia ambifaria AMMD  Bacteria  normal  0.429705  normal 
 
 
-
 
NC_010557  BamMC406_6155  short-chain dehydrogenase/reductase SDR  56.92 
 
 
257 aa  308  5e-83  Burkholderia ambifaria MC40-6  Bacteria  normal  0.30491  normal 
 
 
-
 
NC_008545  Bcen2424_6863  short-chain dehydrogenase/reductase SDR  57.2 
 
 
261 aa  285  5.999999999999999e-76  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224503  n/a   
 
 
-
 
NC_008390  Bamb_1982  short-chain dehydrogenase/reductase SDR  52.71 
 
 
264 aa  278  8e-74  Burkholderia ambifaria AMMD  Bacteria  normal  0.473895  n/a   
 
 
-
 
NC_008345  Sfri_3600  short-chain dehydrogenase/reductase SDR  51.56 
 
 
255 aa  268  5e-71  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000312486  n/a   
 
 
-
 
NC_010506  Swoo_1496  short-chain dehydrogenase/reductase SDR  52.03 
 
 
255 aa  258  5.0000000000000005e-68  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3480  short-chain dehydrogenase/reductase SDR  52.19 
 
 
260 aa  255  5e-67  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0894  short-chain dehydrogenase/reductase SDR  52.19 
 
 
260 aa  253  3e-66  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0859  short-chain dehydrogenase/reductase SDR  51.39 
 
 
260 aa  252  3e-66  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0882  short-chain dehydrogenase/reductase SDR  51.79 
 
 
260 aa  253  3e-66  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0824  short chain dehydrogenase/reductase family oxidoreductase  51.2 
 
 
255 aa  251  6e-66  Colwellia psychrerythraea 34H  Bacteria  normal  0.394944  n/a   
 
 
-
 
NC_009784  VIBHAR_07016  oxidoreductase  49.19 
 
 
256 aa  244  9.999999999999999e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_5965  short-chain dehydrogenase/reductase SDR  49.8 
 
 
250 aa  243  1.9999999999999999e-63  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.443482  normal 
 
 
-
 
NC_009831  Ssed_1363  short chain dehydrogenase/reductase family oxidoreductase  47.64 
 
 
263 aa  232  4.0000000000000004e-60  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3846  short-chain dehydrogenase/reductase SDR  45.16 
 
 
254 aa  224  1e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl2070  hypothetical protein  45.88 
 
 
254 aa  212  5.999999999999999e-54  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2080  hypothetical protein  45.78 
 
 
254 aa  208  5e-53  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011887  Mnod_7850  short-chain dehydrogenase/reductase SDR  41.09 
 
 
256 aa  192  4e-48  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0908  3-oxoacyl-(acyl-carrier-protein) reductase  40.7 
 
 
257 aa  186  5e-46  Pseudomonas aeruginosa PA7  Bacteria  normal  0.117831  n/a   
 
 
-
 
NC_011369  Rleg2_0680  short-chain dehydrogenase/reductase SDR  40 
 
 
255 aa  176  4e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185948  normal 
 
 
-
 
NC_011726  PCC8801_1575  short chain dehydrogenase  37.65 
 
 
249 aa  147  1.0000000000000001e-34  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009952  Dshi_1258  short-chain dehydrogenase/reductase SDR  37.6 
 
 
247 aa  140  1.9999999999999998e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.203668  normal 
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  36.4 
 
 
269 aa  137  1e-31  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_013162  Coch_1303  short-chain dehydrogenase/reductase SDR  32.82 
 
 
258 aa  137  2e-31  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1089  short-chain dehydrogenase/reductase SDR  37.31 
 
 
259 aa  136  3.0000000000000003e-31  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0332234  normal 
 
 
-
 
NC_009832  Spro_4682  short-chain dehydrogenase/reductase SDR  32.14 
 
 
253 aa  135  7.000000000000001e-31  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1834  short-chain dehydrogenase/reductase SDR  35.94 
 
 
257 aa  135  8e-31  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4436  short-chain dehydrogenase/reductase SDR  34.22 
 
 
265 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3565  short-chain dehydrogenase/reductase SDR  36.11 
 
 
244 aa  132  3.9999999999999996e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  33.33 
 
 
247 aa  132  6e-30  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_013525  Tter_1447  short-chain dehydrogenase/reductase SDR  32.3 
 
 
257 aa  132  6e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  32.67 
 
 
253 aa  131  1.0000000000000001e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_011126  HY04AAS1_0509  3-oxoacyl-(acyl-carrier-protein) reductase  33.6 
 
 
245 aa  131  1.0000000000000001e-29  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  33.86 
 
 
260 aa  130  2.0000000000000002e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_010730  SYO3AOP1_1671  3-oxoacyl-(acyl-carrier-protein) reductase  36.61 
 
 
246 aa  129  3e-29  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2090  short-chain dehydrogenase/reductase SDR  37.45 
 
 
249 aa  129  4.0000000000000003e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.120513 
 
 
-
 
NC_013526  Tter_2517  short-chain dehydrogenase/reductase SDR  35.18 
 
 
257 aa  129  5.0000000000000004e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.401645  n/a   
 
 
-
 
NC_011757  Mchl_2365  short-chain dehydrogenase/reductase SDR  37.05 
 
 
249 aa  129  6e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0450975 
 
 
-
 
NC_007413  Ava_3338  tropinone reductase  31.62 
 
 
267 aa  128  9.000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0617958 
 
 
-
 
NC_013757  Gobs_0246  short-chain dehydrogenase/reductase SDR  37.3 
 
 
255 aa  127  1.0000000000000001e-28  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4927  short-chain dehydrogenase/reductase SDR  36.76 
 
 
239 aa  127  2.0000000000000002e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  33.86 
 
 
246 aa  127  2.0000000000000002e-28  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_008705  Mkms_5015  short-chain dehydrogenase/reductase SDR  36.76 
 
 
239 aa  127  2.0000000000000002e-28  Mycobacterium sp. KMS  Bacteria  normal  normal  0.920793 
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  35.63 
 
 
261 aa  127  2.0000000000000002e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  35.34 
 
 
239 aa  126  3e-28  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2516  short-chain dehydrogenase/reductase SDR  37.45 
 
 
256 aa  126  3e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_1680  short chain dehydrogenase/reductase family oxidoreductase  32.41 
 
 
251 aa  126  4.0000000000000003e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.447885  n/a   
 
 
-
 
NC_013510  Tcur_2011  short-chain dehydrogenase/reductase SDR  35.43 
 
 
255 aa  126  4.0000000000000003e-28  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000026464  n/a   
 
 
-
 
NC_011894  Mnod_4381  short-chain dehydrogenase/reductase SDR  35.71 
 
 
254 aa  125  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  33.86 
 
 
246 aa  125  5e-28  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0339  short chain dehydrogenase  37.2 
 
 
245 aa  125  6e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1154  7-alpha-hydroxysteroid dehydrogenase  32.42 
 
 
253 aa  125  7e-28  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000294561  n/a   
 
 
-
 
NC_013739  Cwoe_2104  short-chain dehydrogenase/reductase SDR  37.55 
 
 
250 aa  125  8.000000000000001e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.0259595  normal 
 
 
-
 
NC_013510  Tcur_0220  short-chain dehydrogenase/reductase SDR  35.71 
 
 
247 aa  124  1e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0891  short-chain dehydrogenase/reductase SDR  36.4 
 
 
260 aa  124  1e-27  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.375615 
 
 
-
 
NC_008262  CPR_0991  7-alpha-hydroxysteroid dehydrogenase  32.42 
 
 
253 aa  124  1e-27  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4625  short chain dehydrogenase  35.18 
 
 
249 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.402352  normal  0.18483 
 
 
-
 
NC_011059  Paes_0175  3-oxoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
247 aa  124  2e-27  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5308  short-chain dehydrogenase/reductase SDR  35.97 
 
 
239 aa  124  2e-27  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_2667  3-oxoacyl-(acyl-carrier-protein) reductase  32.14 
 
 
249 aa  124  2e-27  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.000000000680764  n/a   
 
 
-
 
NC_010725  Mpop_0259  short-chain dehydrogenase/reductase SDR  35.71 
 
 
249 aa  124  2e-27  Methylobacterium populi BJ001  Bacteria  normal  normal  0.519285 
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  33.73 
 
 
269 aa  124  2e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2624  3-oxoacyl-(acyl-carrier-protein) reductase  31.89 
 
 
248 aa  122  4e-27  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000523839  unclonable  0.000000000127004 
 
 
-
 
NC_008312  Tery_2914  short chain dehydrogenase  33.33 
 
 
255 aa  122  4e-27  Trichodesmium erythraeum IMS101  Bacteria  normal  0.892644  normal  0.135282 
 
 
-
 
NC_009832  Spro_3866  short-chain dehydrogenase/reductase SDR  31.76 
 
 
249 aa  122  5e-27  Serratia proteamaculans 568  Bacteria  normal  0.508042  normal 
 
 
-
 
NC_008576  Mmc1_1874  3-oxoacyl-[acyl-carrier-protein] reductase  34.01 
 
 
245 aa  122  6e-27  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00756891  normal 
 
 
-
 
NC_010511  M446_2746  short-chain dehydrogenase/reductase SDR  35.16 
 
 
249 aa  121  9e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.458004  normal  0.197887 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  34.77 
 
 
254 aa  121  9e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_009720  Xaut_1138  short-chain dehydrogenase/reductase SDR  35.57 
 
 
255 aa  121  9.999999999999999e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2494  3-oxoacyl-(acyl-carrier-protein) reductase  31.75 
 
 
248 aa  121  9.999999999999999e-27  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.00000000082608  n/a   
 
 
-
 
NC_013501  Rmar_2801  3-oxoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
249 aa  121  9.999999999999999e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1768  3-ketoacyl-(acyl-carrier-protein) reductase NodG  33.07 
 
 
245 aa  121  9.999999999999999e-27  Chelativorans sp. BNC1  Bacteria  normal  0.323162  n/a   
 
 
-
 
NC_013730  Slin_5790  short-chain dehydrogenase/reductase SDR  34.11 
 
 
256 aa  121  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0601767 
 
 
-
 
NC_008782  Ajs_2046  short-chain dehydrogenase/reductase SDR  34.8 
 
 
263 aa  121  9.999999999999999e-27  Acidovorax sp. JS42  Bacteria  decreased coverage  0.00404736  normal 
 
 
-
 
NC_012034  Athe_0213  short-chain dehydrogenase/reductase SDR  31.91 
 
 
264 aa  121  9.999999999999999e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2445  short-chain dehydrogenase/reductase SDR  33.33 
 
 
257 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007950  Bpro_5261  short-chain dehydrogenase/reductase SDR  32.94 
 
 
298 aa  120  1.9999999999999998e-26  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1326  short-chain dehydrogenase/reductase SDR  34.66 
 
 
253 aa  120  1.9999999999999998e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7515  short-chain dehydrogenase/reductase SDR  35.69 
 
 
246 aa  120  1.9999999999999998e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1869  short-chain dehydrogenase/reductase SDR  34.26 
 
 
263 aa  120  3e-26  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  35.29 
 
 
249 aa  120  3e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0012  3-oxoacyl-(acyl-carrier-protein) reductase  34.77 
 
 
248 aa  119  3e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_3469  putative short-chain dehydrogenase  35.43 
 
 
252 aa  119  3.9999999999999996e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007488  RSP_4004  Short-chain dehydrogenase/reductase SDR  35.04 
 
 
259 aa  119  3.9999999999999996e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.132038  n/a   
 
 
-
 
NC_009513  Lreu_0988  short-chain dehydrogenase/reductase SDR  32.02 
 
 
244 aa  119  3.9999999999999996e-26  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1129  short-chain dehydrogenase/reductase SDR  29.92 
 
 
254 aa  119  3.9999999999999996e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.40266  n/a   
 
 
-
 
NC_010551  BamMC406_1208  short-chain dehydrogenase/reductase SDR  33.46 
 
 
260 aa  119  4.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1559  short-chain dehydrogenase/reductase SDR  33.73 
 
 
258 aa  119  4.9999999999999996e-26  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00992918 
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  33.59 
 
 
254 aa  119  4.9999999999999996e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3519  short-chain dehydrogenase/reductase SDR  33.07 
 
 
252 aa  119  6e-26  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0904  Short-chain dehydrogenase/reductase SDR  33.86 
 
 
254 aa  118  7e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5135  3-ketoacyl-(acyl-carrier-protein) reductase  34.63 
 
 
251 aa  118  7e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.971494  n/a   
 
 
-
 
NC_007948  Bpro_3536  short-chain dehydrogenase/reductase SDR  31.52 
 
 
274 aa  118  7e-26  Polaromonas sp. JS666  Bacteria  normal  normal  0.446578 
 
 
-
 
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