| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2459 |
|---|
| Symbol | |
|---|
| ID | 5323320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2541557 |
|---|
| End bp | 2542351 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640791397 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001328126 |
|---|
| Protein GI | 150397659 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG GCAGGGAGGG AAAAGTGTAC GCTGAACTTT TCAGACTGAA TGGGCGCACC
GCCTTGGTAA CCGGCGGCAG CCGCGGAATC GGCTTCGCCT GCGCCGAGGC GCTTGGCGAA
GCCGGTGCCC GCATTGCCGT CTCGGCCCGC TCACTCGACG AAGGCGAAAA GGCTGTGGGG
CAGCTGAGGC AGAAAGGGAT AGAGGCGATC TATCTGCCCG CTGACATTTC CAATGAGGCC
GAAGCGCAGC AGGTCGTCAA AGAGGCGGCA GCAGAATTGG GCGGGCTCGA CATCCTCGTG
AACAATGCCG GAATCGCGCG ACATTGCGAC AGCCTGAAAC TCAAGCCGGA GACCTGGGAC
GAGGTGATCA ACACCAATCT GACCGGCCTT TTCTGGTGCT GTCGCGCCGC GATCGAGACC
ATGGCCACAG CCGGGCGCGG TTCGATCGTC AATATCGGGT CGATCTCGGG TTACATCAGC
AACCTGCCGC AGAATCAGGT CGCCTACAAC GCCAGCAAGG CCGGCGTGCA TATGCTCACG
AAATCGCTCG CGGGCGAATT CGCCAGGAGC AACATACGCA TCAACGCCGT CGCCCCCGGC
TACATCGAAA CGGCCATGAC ACAGGGCGGT CTGGATGATC CCGAATGGTC CAAGATCTGG
CTCGGCATGA CGCCCCTGGG CCGCGCCGGC AAGTCGAGCG AAGTGGCGGC AGCGGTGCTG
TTCCTCGTTT CGGACGCCGC CAGTTACATC ACCGGATCGG TGCTCACCAT CGACGGCGGC
TACACCATCC ATTGA
|
|---|
| Protein sequence | MSAGREGKVY AELFRLNGRT ALVTGGSRGI GFACAEALGE AGARIAVSAR SLDEGEKAVG
QLRQKGIEAI YLPADISNEA EAQQVVKEAA AELGGLDILV NNAGIARHCD SLKLKPETWD
EVINTNLTGL FWCCRAAIET MATAGRGSIV NIGSISGYIS NLPQNQVAYN ASKAGVHMLT
KSLAGEFARS NIRINAVAPG YIETAMTQGG LDDPEWSKIW LGMTPLGRAG KSSEVAAAVL
FLVSDAASYI TGSVLTIDGG YTIH
|
|---|
| |