| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1982 |
|---|
| Symbol | |
|---|
| ID | 4311748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2178111 |
|---|
| End bp | 2178905 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638149799 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_773872 |
|---|
| Protein GI | 115352033 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.473895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCA AACAATTTGA AGGCCGCAAG CTCTTGGTTG TCGGCGGCAC GAGTGGGATC
GGTCTTGAAG TCGCCCGTAT GGTGGCCGAG CAAGGTGGCG CCGTCGTTGT AATCGGCAAT
CGTGCTGAGA AGGCCGAGGT TGCTCGTCAG GAGCTGGCCG CGATCGCCGG CGAACGGAAG
GCTGCGGCCT ACGCGTCCGA CCTGTCTGAC GCAGCGAGCG TGAAATCGCT GCTGGGCAGG
CTCGCTGCTG AGCAGGGCGA CATCGATCTG CTGGTCAACA CCGCTGGCAT CTACTACCCA
AAGGCGTTCC TGGAGCACTC CGTCGAGGAC TACAACAACT TCCTCGACCT TAACCGCTCG
CTGTTCTTCA TTACCCAGCA GGTGGCTGCC TCGTTGGTCG CACGGAAGAA GCCAGGCTCG
ATCGTCAATG TGACCGCCGT CGCCGCTCGC CAAGCGATCG AGACCGTCCC GGCATCGGCC
TACTCGATGG CCAAGATCGG TCTGGACGCC ATGACCAGGC ATGTGGCAGC AGAACTCGCA
GAGCAAGGTA TCCGCGTCAA CTCGGTCAGC CCAGCGATGG TGGAAACCAA GATCTTCGAG
CGCTTCATCC CTGGCGAACA TCTGGGCAGT GCGCTGGATG GATTCAATGC CTTCCATCCG
CTGGGCCGTA ATGGCACACC GCGGGATGTA GCCGAAACCG TCATTTTCCT TCTGTCGGAC
AAGGCCTCGT GGGTCACTGG CGCGGTTTGG GACGTCGATG GCGGCGTCAT GGCTGCCCGC
AAGCTCGGCA AATAG
|
|---|
| Protein sequence | MNTKQFEGRK LLVVGGTSGI GLEVARMVAE QGGAVVVIGN RAEKAEVARQ ELAAIAGERK
AAAYASDLSD AASVKSLLGR LAAEQGDIDL LVNTAGIYYP KAFLEHSVED YNNFLDLNRS
LFFITQQVAA SLVARKKPGS IVNVTAVAAR QAIETVPASA YSMAKIGLDA MTRHVAAELA
EQGIRVNSVS PAMVETKIFE RFIPGEHLGS ALDGFNAFHP LGRNGTPRDV AETVIFLLSD
KASWVTGAVW DVDGGVMAAR KLGK
|
|---|
| |