More than 300 homologs were found in PanDaTox collection
for query gene Sfri_3600 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008345  Sfri_3600  short-chain dehydrogenase/reductase SDR  100 
 
 
255 aa  521  1e-147  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000312486  n/a   
 
 
-
 
NC_009052  Sbal_3480  short-chain dehydrogenase/reductase SDR  68.46 
 
 
260 aa  362  4e-99  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0882  short-chain dehydrogenase/reductase SDR  68.08 
 
 
260 aa  360  2e-98  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1496  short-chain dehydrogenase/reductase SDR  65.1 
 
 
255 aa  359  3e-98  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0859  short-chain dehydrogenase/reductase SDR  67.31 
 
 
260 aa  358  5e-98  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0894  short-chain dehydrogenase/reductase SDR  66.15 
 
 
260 aa  352  4e-96  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1363  short chain dehydrogenase/reductase family oxidoreductase  65.77 
 
 
263 aa  343  2e-93  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0824  short chain dehydrogenase/reductase family oxidoreductase  63.14 
 
 
255 aa  332  5e-90  Colwellia psychrerythraea 34H  Bacteria  normal  0.394944  n/a   
 
 
-
 
NC_008782  Ajs_1384  short-chain dehydrogenase/reductase SDR  62.35 
 
 
257 aa  315  5e-85  Acidovorax sp. JS42  Bacteria  normal  0.981738  normal 
 
 
-
 
NC_010557  BamMC406_6155  short-chain dehydrogenase/reductase SDR  59.11 
 
 
257 aa  301  9e-81  Burkholderia ambifaria MC40-6  Bacteria  normal  0.30491  normal 
 
 
-
 
NC_008392  Bamb_6448  short-chain dehydrogenase/reductase SDR  59.11 
 
 
257 aa  301  9e-81  Burkholderia ambifaria AMMD  Bacteria  normal  0.429705  normal 
 
 
-
 
NC_013132  Cpin_5965  short-chain dehydrogenase/reductase SDR  59.51 
 
 
250 aa  295  4e-79  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.443482  normal 
 
 
-
 
NC_006368  lpp2080  hypothetical protein  56.92 
 
 
254 aa  285  7e-76  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2070  hypothetical protein  56.97 
 
 
254 aa  283  2.0000000000000002e-75  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009784  VIBHAR_07016  oxidoreductase  53.15 
 
 
256 aa  279  3e-74  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_3846  short-chain dehydrogenase/reductase SDR  52.19 
 
 
254 aa  273  2.0000000000000002e-72  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4263  oxidoreductase, short chain dehydrogenase/reductase family  52.44 
 
 
257 aa  270  1e-71  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3420  short-chain dehydrogenase/reductase SDR  51.56 
 
 
256 aa  268  5e-71  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0826034  normal 
 
 
-
 
NC_010515  Bcenmc03_4431  short-chain dehydrogenase/reductase SDR  51.76 
 
 
256 aa  268  7e-71  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.523417  normal 
 
 
-
 
NC_008061  Bcen_4894  short-chain dehydrogenase/reductase SDR  51.37 
 
 
256 aa  266  2e-70  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3269  short-chain dehydrogenase/reductase SDR  51.37 
 
 
256 aa  266  2e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.210768 
 
 
-
 
NC_008545  Bcen2424_6913  short-chain dehydrogenase/reductase SDR  51.37 
 
 
256 aa  266  2e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1982  short-chain dehydrogenase/reductase SDR  46.4 
 
 
264 aa  250  2e-65  Burkholderia ambifaria AMMD  Bacteria  normal  0.473895  n/a   
 
 
-
 
NC_008545  Bcen2424_6863  short-chain dehydrogenase/reductase SDR  49.2 
 
 
261 aa  246  2e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224503  n/a   
 
 
-
 
NC_009656  PSPA7_0908  3-oxoacyl-(acyl-carrier-protein) reductase  44.53 
 
 
257 aa  231  6e-60  Pseudomonas aeruginosa PA7  Bacteria  normal  0.117831  n/a   
 
 
-
 
NC_011887  Mnod_7850  short-chain dehydrogenase/reductase SDR  47.08 
 
 
256 aa  228  1e-58  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0680  short-chain dehydrogenase/reductase SDR  47.97 
 
 
255 aa  209  3e-53  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185948  normal 
 
 
-
 
NC_009832  Spro_4682  short-chain dehydrogenase/reductase SDR  36 
 
 
253 aa  154  2e-36  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2071  short-chain dehydrogenase/reductase SDR  35.86 
 
 
258 aa  135  5e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.70228  normal  0.023925 
 
 
-
 
NC_009952  Dshi_1258  short-chain dehydrogenase/reductase SDR  35.66 
 
 
247 aa  135  5e-31  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.203668  normal 
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  35.39 
 
 
239 aa  135  6.0000000000000005e-31  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_1303  short-chain dehydrogenase/reductase SDR  30.86 
 
 
258 aa  134  1.9999999999999998e-30  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2503  3-oxoacyl-(acyl-carrier-protein) reductase, putative  33.73 
 
 
243 aa  133  3e-30  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011370  Rleg2_6280  short-chain dehydrogenase/reductase SDR  33.2 
 
 
262 aa  133  3e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.365337 
 
 
-
 
NC_008782  Ajs_2046  short-chain dehydrogenase/reductase SDR  33.06 
 
 
263 aa  132  3.9999999999999996e-30  Acidovorax sp. JS42  Bacteria  decreased coverage  0.00404736  normal 
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  34.29 
 
 
269 aa  132  6.999999999999999e-30  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  32.52 
 
 
253 aa  131  1.0000000000000001e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_011992  Dtpsy_1869  short-chain dehydrogenase/reductase SDR  32.65 
 
 
263 aa  131  1.0000000000000001e-29  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1994  short-chain dehydrogenase/reductase SDR  31.89 
 
 
245 aa  131  1.0000000000000001e-29  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3437  short-chain dehydrogenase/reductase SDR  32.93 
 
 
262 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_6105  short-chain dehydrogenase/reductase  34.25 
 
 
265 aa  130  2.0000000000000002e-29  Agrobacterium vitis S4  Bacteria  normal  0.542291  n/a   
 
 
-
 
NC_011830  Dhaf_3817  3-oxoacyl-(acyl-carrier-protein) reductase  33.2 
 
 
247 aa  129  6e-29  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.00000000000000217117  n/a   
 
 
-
 
NC_009832  Spro_2052  short-chain dehydrogenase/reductase SDR  31.17 
 
 
248 aa  128  9.000000000000001e-29  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6829  short-chain dehydrogenase/reductase SDR  33.07 
 
 
237 aa  128  9.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.138862 
 
 
-
 
NC_013132  Cpin_4842  short-chain dehydrogenase/reductase SDR  32.27 
 
 
249 aa  127  1.0000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00384997  hitchhiker  0.000208801 
 
 
-
 
NC_012791  Vapar_0079  short-chain dehydrogenase/reductase SDR  30.98 
 
 
246 aa  128  1.0000000000000001e-28  Variovorax paradoxus S110  Bacteria  normal  0.596846  n/a   
 
 
-
 
NC_003910  CPS_1680  short chain dehydrogenase/reductase family oxidoreductase  32.28 
 
 
251 aa  126  3e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.447885  n/a   
 
 
-
 
NC_010002  Daci_5646  short-chain dehydrogenase/reductase SDR  32.41 
 
 
256 aa  126  3e-28  Delftia acidovorans SPH-1  Bacteria  normal  decreased coverage  0.000512545 
 
 
-
 
NC_011726  PCC8801_1575  short chain dehydrogenase  31.5 
 
 
249 aa  126  4.0000000000000003e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1808  short-chain dehydrogenase/reductase SDR  32.53 
 
 
245 aa  125  5e-28  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  33.2 
 
 
260 aa  125  6e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_008261  CPF_1154  7-alpha-hydroxysteroid dehydrogenase  31.3 
 
 
253 aa  125  7e-28  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000294561  n/a   
 
 
-
 
NC_007517  Gmet_1531  3-oxoacyl-[acyl-carrier-protein] reductase  31.28 
 
 
249 aa  125  8.000000000000001e-28  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.356437 
 
 
-
 
NC_008262  CPR_0991  7-alpha-hydroxysteroid dehydrogenase  31.3 
 
 
253 aa  125  8.000000000000001e-28  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0404  short-chain dehydrogenase/reductase SDR  32.93 
 
 
249 aa  124  2e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0751362 
 
 
-
 
NC_012880  Dd703_0222  gluconate 5-dehydrogenase  33.06 
 
 
254 aa  124  2e-27  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011892  Mnod_8438  short-chain dehydrogenase/reductase SDR  34.25 
 
 
236 aa  124  2e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  33.47 
 
 
269 aa  124  2e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4116  short-chain dehydrogenase/reductase SDR  33.2 
 
 
256 aa  123  3e-27  Mycobacterium sp. MCS  Bacteria  normal  0.165575  n/a   
 
 
-
 
NC_008148  Rxyl_3007  short-chain dehydrogenase/reductase SDR  31.62 
 
 
252 aa  123  3e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.22334  n/a   
 
 
-
 
NC_008705  Mkms_4191  short-chain dehydrogenase/reductase SDR  33.2 
 
 
256 aa  123  3e-27  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4263  gluconate 5-dehydrogenase  33.07 
 
 
263 aa  123  3e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2437  short-chain dehydrogenase/reductase SDR  34.68 
 
 
255 aa  122  4e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1972  3-ketoacyl-(acyl-carrier-protein) reductase  34.4 
 
 
247 aa  122  4e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_2516  short-chain dehydrogenase/reductase SDR  34.92 
 
 
256 aa  122  5e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007948  Bpro_1454  short-chain dehydrogenase/reductase SDR  34.31 
 
 
249 aa  122  5e-27  Polaromonas sp. JS666  Bacteria  normal  0.77933  normal  0.490701 
 
 
-
 
NC_011369  Rleg2_0253  short-chain dehydrogenase/reductase SDR  34.82 
 
 
241 aa  122  6e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1734  short-chain dehydrogenase/reductase SDR  32.93 
 
 
275 aa  122  6e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6220  short-chain dehydrogenase/reductase SDR  32.41 
 
 
252 aa  122  6e-27  Burkholderia ambifaria AMMD  Bacteria  normal  0.621886  normal 
 
 
-
 
NC_013132  Cpin_4576  short-chain dehydrogenase/reductase SDR  31.47 
 
 
244 aa  122  7e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.202963  normal 
 
 
-
 
NC_011126  HY04AAS1_0509  3-oxoacyl-(acyl-carrier-protein) reductase  31.58 
 
 
245 aa  122  7e-27  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  33.6 
 
 
246 aa  121  9e-27  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_008254  Meso_3434  short-chain dehydrogenase/reductase SDR  33.33 
 
 
263 aa  121  9e-27  Chelativorans sp. BNC1  Bacteria  normal  0.101369  n/a   
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  33.6 
 
 
246 aa  121  9.999999999999999e-27  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  33.85 
 
 
261 aa  121  9.999999999999999e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_010505  Mrad2831_3742  short-chain dehydrogenase/reductase SDR  32.8 
 
 
260 aa  121  9.999999999999999e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.071685 
 
 
-
 
NC_013730  Slin_6198  short-chain dehydrogenase/reductase SDR  33.33 
 
 
260 aa  121  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2893  short-chain dehydrogenase/reductase SDR  33.6 
 
 
255 aa  121  9.999999999999999e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5843  short-chain dehydrogenase/reductase SDR  30.89 
 
 
261 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.861263  normal 
 
 
-
 
NC_008255  CHU_1091  7-alpha-hydroxysteroid dehydrogenase  33.46 
 
 
246 aa  120  1.9999999999999998e-26  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0983747 
 
 
-
 
NC_013595  Sros_4576  short-chain dehydrogenase/reductase SDR  32.81 
 
 
248 aa  120  1.9999999999999998e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.113643 
 
 
-
 
NC_010682  Rpic_0105  short-chain dehydrogenase/reductase SDR  33.47 
 
 
295 aa  120  3e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3913  short-chain dehydrogenase/reductase SDR  40.78 
 
 
237 aa  120  3e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4348  short-chain dehydrogenase/reductase SDR  32.41 
 
 
236 aa  119  3e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.823656 
 
 
-
 
NC_013159  Svir_16710  3-ketoacyl-(acyl-carrier-protein) reductase  36.02 
 
 
250 aa  120  3e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2366  short-chain dehydrogenase/reductase SDR  31.17 
 
 
244 aa  119  3.9999999999999996e-26  Pseudomonas putida W619  Bacteria  normal  0.977766  normal 
 
 
-
 
NC_007412  Ava_C0109  short chain dehydrogenase  31.98 
 
 
251 aa  119  3.9999999999999996e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2319  putative short-chain dehydrogenase/reductase SDR  33.99 
 
 
259 aa  119  3.9999999999999996e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_0197  3-oxoacyl-(acyl-carrier-protein) reductase  31.58 
 
 
245 aa  119  6e-26  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5255  short-chain dehydrogenase/reductase SDR  29.27 
 
 
259 aa  119  6e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5197  short-chain dehydrogenase/reductase SDR  30.74 
 
 
251 aa  119  6e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2104  short-chain dehydrogenase/reductase SDR  33.47 
 
 
250 aa  119  6e-26  Conexibacter woesei DSM 14684  Bacteria  normal  0.0259595  normal 
 
 
-
 
NC_011312  VSAL_I2241  3-ketoacyl-(acyl-carrier-protein) reductase  34.13 
 
 
245 aa  119  6e-26  Aliivibrio salmonicida LFI1238  Bacteria  unclonable  0.0000319418  n/a   
 
 
-
 
NC_008819  NATL1_05081  3-oxoacyl-[acyl-carrier protein] reductase  33.86 
 
 
250 aa  119  6e-26  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.162194 
 
 
-
 
NC_010730  SYO3AOP1_1671  3-oxoacyl-(acyl-carrier-protein) reductase  33.73 
 
 
246 aa  118  7e-26  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0282  short-chain dehydrogenase/reductase SDR  33.6 
 
 
241 aa  118  7.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.550134  normal 
 
 
-
 
NC_009077  Mjls_4347  short-chain dehydrogenase/reductase SDR  32.4 
 
 
256 aa  118  7.999999999999999e-26  Mycobacterium sp. JLS  Bacteria  normal  normal  0.206497 
 
 
-
 
NC_009077  Mjls_3782  short-chain dehydrogenase/reductase SDR  29.57 
 
 
282 aa  118  7.999999999999999e-26  Mycobacterium sp. JLS  Bacteria  normal  0.25135  normal 
 
 
-
 
NC_010581  Bind_2090  short-chain dehydrogenase/reductase SDR  33.07 
 
 
237 aa  118  9e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1273  short-chain dehydrogenase/reductase SDR  32.54 
 
 
257 aa  118  9e-26  Opitutus terrae PB90-1  Bacteria  normal  0.355177  normal 
 
 
-
 
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