Gene Lcho_0404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0404 
Symbol 
ID6161693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp442958 
End bp443707 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content71% 
IMG OID641663153 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001789444 
Protein GI171057095 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0751362 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCTGA AAGACAAAGT CGCCCTGATC ACCGGCGGTG CCGGCCCCAA CGGCCTCGGT 
TTCGCCACCG CCCGCATGAT GGCCGAGCAG GGCGCGCGCA TCGTCATCCT CGACCTGGCC
CAGGCCGACC CGGCCGGCGC CGCCGCCCGC CTGGGCCCGC AGCACATCGG CGTGGTCGCC
GACGTGACCG ACAAGGCATC CTGCGAGCTG GCCGCCAGGA CGGTGCTCGA AACCTGCGGC
CGCATCGACG TGCTGGTCAA CAACGCCGGC ATCACCCAGC CGCGCAAGAC CGTCGACATC
ACCGGCGCCG ACTACGACGC CGTGCTGGAC GTGAGCCTGC GCGGCACGCT CTACATGTCG
CAGGCCGTGC TGCCGGCGAT GCGCGCGCAG AAGGGCGGCG CGATCGTCTG CATCTCGTCG
GTCTCGGCGC AGCGCGGCGG CGGCATCCTG GGCGGCCCGC ACTACTCGGC GGCCAAGGCC
GGCGTGCTGG GCCTGGCGCG GGCGATGGCG CGTGAATACG GCAACGACAA CGTGCGCATC
AACTGCGTCA CGCCGGGCCT GATCGCCACC GACATCAACA AGGGCCTGAT CCCGGCCGAC
CGCATGGTCG GCATCCTCGA GCAGATCCCG CTCAACCGCA TCGGCGGCCC CGACGACGTC
GCCGGCTGCG TGGTGTTCCT GGCCAGCGAC CTGGCCAGGT ACTGCACCGG CGTCACGCTC
GACGTCAACG GCGGCATGCT GATCCACTGA
 
Protein sequence
MLLKDKVALI TGGAGPNGLG FATARMMAEQ GARIVILDLA QADPAGAAAR LGPQHIGVVA 
DVTDKASCEL AARTVLETCG RIDVLVNNAG ITQPRKTVDI TGADYDAVLD VSLRGTLYMS
QAVLPAMRAQ KGGAIVCISS VSAQRGGGIL GGPHYSAAKA GVLGLARAMA REYGNDNVRI
NCVTPGLIAT DINKGLIPAD RMVGILEQIP LNRIGGPDDV AGCVVFLASD LARYCTGVTL
DVNGGMLIH