More than 300 homologs were found in PanDaTox collection
for query gene Swoo_1496 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_1496  short-chain dehydrogenase/reductase SDR  100 
 
 
255 aa  520  1e-147  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1363  short chain dehydrogenase/reductase family oxidoreductase  77.95 
 
 
263 aa  431  1e-120  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0824  short chain dehydrogenase/reductase family oxidoreductase  67.06 
 
 
255 aa  371  1e-102  Colwellia psychrerythraea 34H  Bacteria  normal  0.394944  n/a   
 
 
-
 
NC_008345  Sfri_3600  short-chain dehydrogenase/reductase SDR  65.1 
 
 
255 aa  359  3e-98  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000312486  n/a   
 
 
-
 
NC_009665  Shew185_0859  short-chain dehydrogenase/reductase SDR  63.46 
 
 
260 aa  348  5e-95  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3480  short-chain dehydrogenase/reductase SDR  62.69 
 
 
260 aa  346  2e-94  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0882  short-chain dehydrogenase/reductase SDR  62.69 
 
 
260 aa  346  2e-94  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0894  short-chain dehydrogenase/reductase SDR  63.08 
 
 
260 aa  345  4e-94  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5965  short-chain dehydrogenase/reductase SDR  59.92 
 
 
250 aa  310  2e-83  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.443482  normal 
 
 
-
 
NC_008782  Ajs_1384  short-chain dehydrogenase/reductase SDR  60.32 
 
 
257 aa  308  8e-83  Acidovorax sp. JS42  Bacteria  normal  0.981738  normal 
 
 
-
 
NC_010557  BamMC406_6155  short-chain dehydrogenase/reductase SDR  59.51 
 
 
257 aa  306  2.0000000000000002e-82  Burkholderia ambifaria MC40-6  Bacteria  normal  0.30491  normal 
 
 
-
 
NC_008392  Bamb_6448  short-chain dehydrogenase/reductase SDR  59.51 
 
 
257 aa  306  2.0000000000000002e-82  Burkholderia ambifaria AMMD  Bacteria  normal  0.429705  normal 
 
 
-
 
NC_006368  lpp2080  hypothetical protein  56.52 
 
 
254 aa  289  2e-77  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009784  VIBHAR_07016  oxidoreductase  53.73 
 
 
256 aa  290  2e-77  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2070  hypothetical protein  57.43 
 
 
254 aa  289  3e-77  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_3846  short-chain dehydrogenase/reductase SDR  53.6 
 
 
254 aa  281  7.000000000000001e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4263  oxidoreductase, short chain dehydrogenase/reductase family  52.03 
 
 
257 aa  269  4e-71  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3420  short-chain dehydrogenase/reductase SDR  52.03 
 
 
256 aa  258  5.0000000000000005e-68  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0826034  normal 
 
 
-
 
NC_010515  Bcenmc03_4431  short-chain dehydrogenase/reductase SDR  52.03 
 
 
256 aa  258  7e-68  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.523417  normal 
 
 
-
 
NC_008061  Bcen_4894  short-chain dehydrogenase/reductase SDR  51.63 
 
 
256 aa  256  2e-67  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3269  short-chain dehydrogenase/reductase SDR  51.63 
 
 
256 aa  256  2e-67  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.210768 
 
 
-
 
NC_008545  Bcen2424_6913  short-chain dehydrogenase/reductase SDR  51.63 
 
 
256 aa  256  2e-67  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0908  3-oxoacyl-(acyl-carrier-protein) reductase  44.58 
 
 
257 aa  236  2e-61  Pseudomonas aeruginosa PA7  Bacteria  normal  0.117831  n/a   
 
 
-
 
NC_008545  Bcen2424_6863  short-chain dehydrogenase/reductase SDR  44.8 
 
 
261 aa  235  5.0000000000000005e-61  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224503  n/a   
 
 
-
 
NC_008390  Bamb_1982  short-chain dehydrogenase/reductase SDR  44.8 
 
 
264 aa  232  4.0000000000000004e-60  Burkholderia ambifaria AMMD  Bacteria  normal  0.473895  n/a   
 
 
-
 
NC_011887  Mnod_7850  short-chain dehydrogenase/reductase SDR  43.14 
 
 
256 aa  214  9.999999999999999e-55  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0680  short-chain dehydrogenase/reductase SDR  44.98 
 
 
255 aa  206  3e-52  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185948  normal 
 
 
-
 
NC_009832  Spro_4682  short-chain dehydrogenase/reductase SDR  36.29 
 
 
253 aa  164  1.0000000000000001e-39  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  33.06 
 
 
253 aa  138  1e-31  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_007517  Gmet_1531  3-oxoacyl-[acyl-carrier-protein] reductase  33.74 
 
 
249 aa  137  2e-31  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.356437 
 
 
-
 
NC_011894  Mnod_3437  short-chain dehydrogenase/reductase SDR  34.01 
 
 
262 aa  136  3.0000000000000003e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  35.8 
 
 
239 aa  134  1.9999999999999998e-30  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1994  short-chain dehydrogenase/reductase SDR  35.66 
 
 
245 aa  132  3.9999999999999996e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0079  short-chain dehydrogenase/reductase SDR  31.98 
 
 
246 aa  132  5e-30  Variovorax paradoxus S110  Bacteria  normal  0.596846  n/a   
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  32.41 
 
 
269 aa  131  9e-30  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6829  short-chain dehydrogenase/reductase SDR  29.84 
 
 
237 aa  130  2.0000000000000002e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.138862 
 
 
-
 
NC_008782  Ajs_2046  short-chain dehydrogenase/reductase SDR  31.89 
 
 
263 aa  130  2.0000000000000002e-29  Acidovorax sp. JS42  Bacteria  decreased coverage  0.00404736  normal 
 
 
-
 
NC_009620  Smed_3913  short-chain dehydrogenase/reductase SDR  33.06 
 
 
237 aa  130  3e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1869  short-chain dehydrogenase/reductase SDR  31.5 
 
 
263 aa  129  5.0000000000000004e-29  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2052  short-chain dehydrogenase/reductase SDR  32.65 
 
 
248 aa  128  8.000000000000001e-29  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2503  3-oxoacyl-(acyl-carrier-protein) reductase, putative  32.11 
 
 
243 aa  127  1.0000000000000001e-28  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3225  bacilysin biosynthesis oxidoreductase BacC  30.61 
 
 
242 aa  127  1.0000000000000001e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_1303  short-chain dehydrogenase/reductase SDR  33.07 
 
 
258 aa  127  2.0000000000000002e-28  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6280  short-chain dehydrogenase/reductase SDR  31.56 
 
 
262 aa  127  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.365337 
 
 
-
 
NC_013411  GYMC61_2516  short-chain dehydrogenase/reductase SDR  34.5 
 
 
256 aa  126  3e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010552  BamMC406_5255  short-chain dehydrogenase/reductase SDR  31.98 
 
 
259 aa  126  4.0000000000000003e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2807  short-chain dehydrogenase/reductase SDR  33.47 
 
 
253 aa  125  9e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.422647 
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  31.84 
 
 
260 aa  123  2e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_011988  Avi_6105  short-chain dehydrogenase/reductase  33.6 
 
 
265 aa  124  2e-27  Agrobacterium vitis S4  Bacteria  normal  0.542291  n/a   
 
 
-
 
NC_007348  Reut_B5126  Short-chain dehydrogenase/reductase SDR  30.71 
 
 
236 aa  123  3e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  34.94 
 
 
246 aa  123  3e-27  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  33.33 
 
 
269 aa  123  3e-27  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008009  Acid345_0265  3-oxoacyl-[acyl-carrier-protein] reductase  31.76 
 
 
248 aa  123  4e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.534726  normal 
 
 
-
 
NC_013526  Tter_2361  short-chain dehydrogenase/reductase SDR  34 
 
 
258 aa  122  4e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.11166  n/a   
 
 
-
 
NC_009077  Mjls_2652  short-chain dehydrogenase/reductase SDR  35.22 
 
 
284 aa  122  5e-27  Mycobacterium sp. JLS  Bacteria  normal  0.690053  normal 
 
 
-
 
NC_008786  Veis_2183  short-chain dehydrogenase/reductase SDR  34.02 
 
 
244 aa  122  6e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.389501 
 
 
-
 
NC_012792  Vapar_5671  short-chain dehydrogenase/reductase SDR  31.09 
 
 
271 aa  122  7e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011892  Mnod_8438  short-chain dehydrogenase/reductase SDR  32.66 
 
 
236 aa  121  9e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1680  short chain dehydrogenase/reductase family oxidoreductase  32.52 
 
 
251 aa  121  9.999999999999999e-27  Colwellia psychrerythraea 34H  Bacteria  normal  0.447885  n/a   
 
 
-
 
NC_007336  Reut_C6036  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  30.16 
 
 
254 aa  121  9.999999999999999e-27  Ralstonia eutropha JMP134  Bacteria  normal  0.0528417  n/a   
 
 
-
 
NC_009441  Fjoh_4263  gluconate 5-dehydrogenase  34.52 
 
 
263 aa  121  9.999999999999999e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6537  short-chain dehydrogenase/reductase SDR  30.45 
 
 
236 aa  120  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.345333 
 
 
-
 
NC_008146  Mmcs_2623  short-chain dehydrogenase/reductase SDR  34.82 
 
 
284 aa  121  9.999999999999999e-27  Mycobacterium sp. MCS  Bacteria  normal  0.795257  n/a   
 
 
-
 
NC_008262  CPR_0392  2-deoxy-D-gluconate 3-dehydrogenase  34.54 
 
 
258 aa  121  9.999999999999999e-27  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2667  short-chain dehydrogenase/reductase SDR  34.82 
 
 
284 aa  121  9.999999999999999e-27  Mycobacterium sp. KMS  Bacteria  normal  0.459641  normal  0.940814 
 
 
-
 
NC_010501  PputW619_2366  short-chain dehydrogenase/reductase SDR  28.97 
 
 
244 aa  121  9.999999999999999e-27  Pseudomonas putida W619  Bacteria  normal  0.977766  normal 
 
 
-
 
NC_010002  Daci_5646  short-chain dehydrogenase/reductase SDR  29.64 
 
 
256 aa  120  1.9999999999999998e-26  Delftia acidovorans SPH-1  Bacteria  normal  decreased coverage  0.000512545 
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  34.54 
 
 
246 aa  120  1.9999999999999998e-26  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_010511  M446_1734  short-chain dehydrogenase/reductase SDR  31.58 
 
 
275 aa  120  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0246  short-chain dehydrogenase/reductase SDR  33.6 
 
 
255 aa  120  1.9999999999999998e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  29.6 
 
 
262 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_008699  Noca_1834  short-chain dehydrogenase/reductase SDR  32.28 
 
 
257 aa  120  1.9999999999999998e-26  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0214  short-chain dehydrogenase/reductase SDR  32.79 
 
 
256 aa  119  3e-26  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_2090  short-chain dehydrogenase/reductase SDR  31.87 
 
 
237 aa  120  3e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1808  short-chain dehydrogenase/reductase SDR  31.75 
 
 
245 aa  120  3e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0396  2-deoxy-D-gluconate 3-dehydrogenase  34.54 
 
 
258 aa  120  3e-26  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1164  gluconate 5-dehydrogenase  30.77 
 
 
263 aa  119  3.9999999999999996e-26  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0553  short-chain dehydrogenase/reductase SDR  34.84 
 
 
255 aa  119  3.9999999999999996e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1803  short-chain dehydrogenase/reductase SDR  32.64 
 
 
262 aa  119  4.9999999999999996e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.225984 
 
 
-
 
NC_007963  Csal_1129  short-chain dehydrogenase/reductase SDR  31.37 
 
 
254 aa  119  4.9999999999999996e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.40266  n/a   
 
 
-
 
NC_011726  PCC8801_1575  short chain dehydrogenase  30.36 
 
 
249 aa  119  4.9999999999999996e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008697  Noca_4814  short-chain dehydrogenase/reductase SDR  33.86 
 
 
257 aa  119  4.9999999999999996e-26  Nocardioides sp. JS614  Bacteria  normal  0.19857  normal 
 
 
-
 
NC_008825  Mpe_A2921  dehydrogenase  31.45 
 
 
261 aa  119  6e-26  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.932836 
 
 
-
 
NC_007511  Bcep18194_B0533  short chain dehydrogenase  31.54 
 
 
257 aa  119  6e-26  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2071  short-chain dehydrogenase/reductase SDR  32.94 
 
 
258 aa  119  6e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.70228  normal  0.023925 
 
 
-
 
NC_008146  Mmcs_4116  short-chain dehydrogenase/reductase SDR  32.94 
 
 
256 aa  118  7e-26  Mycobacterium sp. MCS  Bacteria  normal  0.165575  n/a   
 
 
-
 
NC_008705  Mkms_4191  short-chain dehydrogenase/reductase SDR  32.94 
 
 
256 aa  118  7e-26  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_3007  short-chain dehydrogenase/reductase SDR  31.3 
 
 
252 aa  118  7.999999999999999e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.22334  n/a   
 
 
-
 
NC_009952  Dshi_1258  short-chain dehydrogenase/reductase SDR  31.2 
 
 
247 aa  118  9e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.203668  normal 
 
 
-
 
NC_009832  Spro_3866  short-chain dehydrogenase/reductase SDR  34.66 
 
 
249 aa  118  9e-26  Serratia proteamaculans 568  Bacteria  normal  0.508042  normal 
 
 
-
 
NC_013440  Hoch_5197  short-chain dehydrogenase/reductase SDR  31.43 
 
 
251 aa  118  9.999999999999999e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3580  short-chain dehydrogenase/reductase SDR  32.11 
 
 
252 aa  117  9.999999999999999e-26  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  31.87 
 
 
258 aa  117  9.999999999999999e-26  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_009512  Pput_1844  short-chain dehydrogenase/reductase SDR  30.31 
 
 
255 aa  117  9.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.0017919 
 
 
-
 
NC_009379  Pnuc_1540  short-chain dehydrogenase/reductase SDR  30.49 
 
 
267 aa  117  1.9999999999999998e-25  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.239754  n/a   
 
 
-
 
NC_009077  Mjls_4347  short-chain dehydrogenase/reductase SDR  33.2 
 
 
256 aa  117  1.9999999999999998e-25  Mycobacterium sp. JLS  Bacteria  normal  normal  0.206497 
 
 
-
 
NC_014151  Cfla_3357  short-chain dehydrogenase/reductase SDR  32.66 
 
 
247 aa  117  1.9999999999999998e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.585241  normal  0.0114993 
 
 
-
 
NC_008254  Meso_3434  short-chain dehydrogenase/reductase SDR  33.73 
 
 
263 aa  117  1.9999999999999998e-25  Chelativorans sp. BNC1  Bacteria  normal  0.101369  n/a   
 
 
-
 
NC_014248  Aazo_3207  3-oxoacyl-(acyl-carrier-protein) reductase  31.25 
 
 
246 aa  117  1.9999999999999998e-25  'Nostoc azollae' 0708  Bacteria  normal  0.819769  n/a   
 
 
-
 
NC_011884  Cyan7425_1963  short-chain dehydrogenase/reductase SDR  32 
 
 
257 aa  116  3e-25  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.922459 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>