| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1540 |
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| Symbol | |
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| ID | 5053610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1609432 |
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| End bp | 1610235 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471713 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001156318 |
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| Protein GI | 145589721 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.239754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACA AGGATTCAAA CAAACGTCAT GTTGCCGTTG TCACTGGTGG TGCTCGCGGA
ATTGGTTTAG GAATAGGCAA ATGGTTTTTG CGCCATGGAT ATCAAGTTGC CTTGCTCGAC
ATTGATAAAG TTACTCTCGA TAAAACAATG CAATCTATTG GCTCTGAAGA TGTTATTGGC
ATTCATTGCG ATGTGTCTAA GCCACAAGAG GTTGAAAAAG CATCTCAAGA GGTATTGGCT
CAATTTGGTC ATGTAGACGC ACTGGTCAAT AACGCAGGAG TTGCTGTATT TAAGCCGGTA
TTGGAAACCT CATTTGATGA ATGGCGCACA GTTCTTGGAA CCAACTTAGA TGGCGCATTT
ATTTGTTCAC AAGTATTTGG GCGATCAATT GTTCAAAACG GTGGGGGCGC GATTGTGAAC
ATCGCTTCTA TATCAGGTTT GCGAGCTAGC ACCCTCAGGG TTGCTTATGG CACCAGTAAA
GCTGCATTGA TTCAATTGAC AAAACAATAC GCTGTGGAGT TAGGTAATCT CAATGTACGT
GTCAATGTCA TTGCCCCAGG CCCAGTTGAG ACTGAAATGG CAAAGCTAGT TCATAGCGTG
GCCATCCGGA CGGATTATTA CGACGCCATT CCCCTGGGTC GCTACGGCAC CGTAGAAGAA
ATGGCGAATA CAGTCGGCTT TTTATGTAGC GAGCAAGCCG CTTTTATTAA TGGGCAAGTA
ATCGCAGTGG ATGGAGGCTT TGAGGCAACT GGGGTTGGCT TGCCTACCCT GCGCCGCAAT
GGGGCGCCCG CTAAGGCCTA TTAA
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| Protein sequence | MNNKDSNKRH VAVVTGGARG IGLGIGKWFL RHGYQVALLD IDKVTLDKTM QSIGSEDVIG
IHCDVSKPQE VEKASQEVLA QFGHVDALVN NAGVAVFKPV LETSFDEWRT VLGTNLDGAF
ICSQVFGRSI VQNGGGAIVN IASISGLRAS TLRVAYGTSK AALIQLTKQY AVELGNLNVR
VNVIAPGPVE TEMAKLVHSV AIRTDYYDAI PLGRYGTVEE MANTVGFLCS EQAAFINGQV
IAVDGGFEAT GVGLPTLRRN GAPAKAY
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