| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5671 |
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| Symbol | |
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| ID | 7975724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 379139 |
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| End bp | 379954 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796254 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947528 |
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| Protein GI | 239820343 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAAC TCTCCGCTTC ATCGTCTTCC CGCGTCGCCG TCGTCACCGG AGGCGCGCGC
GGCATCGGCC TGGCCATCGG CCGCTGGTTC CTGGCGCACG GCTACAGCGT CGCGCTGCTC
GACGTCGACG GCGCCACGCT CGACCAGGCG GTGGCCGAAG TCGCGCAGCC CGCGAAGCTG
CTCGGCCTGC ACTGCGACGT GTCGAAGCCG TCGCAGGTCG AGAGCGCGGC AAAGGCCGTG
GTCGAGCGCT TCGGCCGCGT CGATGCGCTG GTCAACAACG CCGGCGTGGC GGTGTTCAAG
CCGGTGCTCC GGACTTCGTT CGAGGAATGG CGCACCGTGC TCGGCACCAA CCTGGACGGC
GCCTTCCTCT GCACGCAGGC CTTCGGCGCG CTGATGGTCG AACGCGGGAG CGGCGCGGTG
GTGAACATCG CCTCCATCTC GGGCCTGCGC GCCAGCACGC TGCGGGTGGC CTACGGCACC
AGCAAGGCGG CGCTCATCCA CCTGACCAAG CAGCATGCGG TGGAGCTGGG CAACGCCGGC
GTGCGCGTGA ACGTGATCGC GCCGGGGCCG GTGGAAACCG AGATGGCCAA GCTCGTGCAC
AGCGTGGCGA TCCGCTCCGA CTACTACGAC ACCATTCCGC TCGGCCGCTA CGGCACGCCG
GAGGAAATGG CCAACGCCGT GGGCTTCCTG TGCAGCGACG AGGCGAGCTT CATCAACGGC
CAGGTGCTGG CCGTCGATGG CGGCTTCGAT GCCGCCGGCG TCGGCCTGCC GACCCTGCGC
CGGGGCATGC CCGTGCCCGC CACCGACCAC GCCTGA
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| Protein sequence | MTELSASSSS RVAVVTGGAR GIGLAIGRWF LAHGYSVALL DVDGATLDQA VAEVAQPAKL
LGLHCDVSKP SQVESAAKAV VERFGRVDAL VNNAGVAVFK PVLRTSFEEW RTVLGTNLDG
AFLCTQAFGA LMVERGSGAV VNIASISGLR ASTLRVAYGT SKAALIHLTK QHAVELGNAG
VRVNVIAPGP VETEMAKLVH SVAIRSDYYD TIPLGRYGTP EEMANAVGFL CSDEASFING
QVLAVDGGFD AAGVGLPTLR RGMPVPATDH A
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