| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6448 |
|---|
| Symbol | |
|---|
| ID | 4315352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 1077670 |
|---|
| End bp | 1078443 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638154292 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_778326 |
|---|
| Protein GI | 115361189 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.429705 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACC AATTCAAGGG CAAGAAACTG CTGGTCGTCG GCGGTACCAG TGGCATGGGC
ATGCAGTCGG CGCGCATGGT GCTGGCCGAA GGCGGCAGCG CAGTAATCGT CGGCAATCGT
CCGGAGAAAA CGGAAGAAGC GCGAGCGGAA CTGGCCAAGC TCGGCCAAGT ATGGGCAGTG
ACCGCAGACC TGTCCAGCGA CGACGGCGTA GCGACGCTGC TCAAAACCAT CGACGAACAG
CACGCCGACA TCGATCTGCT GGTCAATGCC GCGGGTGTGT TCTTCCCCAA GCCTTTCCTC
GAGCATACCG GCGCGGATTA TGACCAATAC ATGAAGCTGA ACAAGGCGTT CTACTTCATC
ACGCAGAAGG TCGCCGCCAA TCTGGTCGCC AACGGCAAGC CGGGCGCAAT CGTCAACATC
GGTTCGATGT GGGCAAAGCA GGCCATCGCA GCCACGCCGT CGTCCGCCTA TTCGATGGCG
AAGGCCGGTC TGCACTCGCT GACCCAGCAC CTGGCGATGG AGCTCGCGCC CAAGCACATC
CGTGTCAATG CCGTGTCGCC GGCGGTCGTT CAGACCCCCA TCTACGAGGG CTTCATCCCC
AAGGCGGAAG TCCACACCGC ACTGCAAGGG TTCAACACGT TCCACCCGAT CGGCCGCGTG
GGTACGCCGC AAGACGTCGC GGAAGTCGTC GCTTTCCTGC TCTCGGACAA GGCGAGCTGG
GTCACCGGCG CGATCTGGGA TGTCGACGGC GGCGTGATGG CCGGCCGCAA TTGA
|
|---|
| Protein sequence | MSNQFKGKKL LVVGGTSGMG MQSARMVLAE GGSAVIVGNR PEKTEEARAE LAKLGQVWAV
TADLSSDDGV ATLLKTIDEQ HADIDLLVNA AGVFFPKPFL EHTGADYDQY MKLNKAFYFI
TQKVAANLVA NGKPGAIVNI GSMWAKQAIA ATPSSAYSMA KAGLHSLTQH LAMELAPKHI
RVNAVSPAVV QTPIYEGFIP KAEVHTALQG FNTFHPIGRV GTPQDVAEVV AFLLSDKASW
VTGAIWDVDG GVMAGRN
|
|---|
| |