More than 300 homologs were found in PanDaTox collection
for query gene RPD_4158 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  100 
 
 
262 aa  526  1e-148  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_011004  Rpal_1300  short-chain dehydrogenase/reductase SDR  80.84 
 
 
262 aa  437  9.999999999999999e-123  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4257  Short-chain dehydrogenase/reductase SDR  83.21 
 
 
262 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0797349  normal 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  75.39 
 
 
261 aa  394  1e-109  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6893  putative 3-oxoacyl-(acyl-carrier-protein) reductase  74.9 
 
 
266 aa  391  1e-108  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00227102  normal  0.0503904 
 
 
-
 
NC_011894  Mnod_1178  short-chain dehydrogenase/reductase SDR  73.62 
 
 
262 aa  379  1e-104  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1803  short-chain dehydrogenase/reductase SDR  73.6 
 
 
262 aa  369  1e-101  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.225984 
 
 
-
 
NC_010505  Mrad2831_3742  short-chain dehydrogenase/reductase SDR  69.11 
 
 
260 aa  359  3e-98  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.071685 
 
 
-
 
NC_012792  Vapar_5671  short-chain dehydrogenase/reductase SDR  61.63 
 
 
271 aa  306  2.0000000000000002e-82  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0097  short-chain dehydrogenase/reductase SDR  59.68 
 
 
262 aa  305  5.0000000000000004e-82  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2375  short-chain dehydrogenase/reductase SDR  59.29 
 
 
265 aa  303  1.0000000000000001e-81  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008786  Veis_4817  short-chain dehydrogenase/reductase SDR  56.76 
 
 
275 aa  293  1e-78  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.225049 
 
 
-
 
NC_009952  Dshi_0620  3-oxoacyl-[acyl-carrier-protein] reductase  56.52 
 
 
250 aa  280  2e-74  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.890979 
 
 
-
 
NC_009379  Pnuc_1540  short-chain dehydrogenase/reductase SDR  54.9 
 
 
267 aa  279  3e-74  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.239754  n/a   
 
 
-
 
NC_008688  Pden_4822  short-chain dehydrogenase/reductase SDR  55.16 
 
 
253 aa  264  1e-69  Paracoccus denitrificans PD1222  Bacteria  normal  0.237012  normal  0.451819 
 
 
-
 
NC_011894  Mnod_3437  short-chain dehydrogenase/reductase SDR  51.43 
 
 
262 aa  228  6e-59  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1734  short-chain dehydrogenase/reductase SDR  50.2 
 
 
275 aa  211  7.999999999999999e-54  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2807  short-chain dehydrogenase/reductase SDR  44.44 
 
 
253 aa  195  6e-49  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.422647 
 
 
-
 
NC_008254  Meso_3619  short-chain dehydrogenase/reductase SDR  41.94 
 
 
247 aa  187  1e-46  Chelativorans sp. BNC1  Bacteria  decreased coverage  0.00790972  n/a   
 
 
-
 
NC_010623  Bphy_4924  short-chain dehydrogenase/reductase SDR  43.67 
 
 
267 aa  186  2e-46  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1844  short-chain dehydrogenase/reductase SDR  39.92 
 
 
255 aa  185  8e-46  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.0017919 
 
 
-
 
NC_011894  Mnod_3075  short-chain dehydrogenase/reductase SDR  41.67 
 
 
261 aa  183  2.0000000000000003e-45  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5255  short-chain dehydrogenase/reductase SDR  39.44 
 
 
259 aa  182  5.0000000000000004e-45  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5646  short-chain dehydrogenase/reductase SDR  43.6 
 
 
256 aa  182  5.0000000000000004e-45  Delftia acidovorans SPH-1  Bacteria  normal  decreased coverage  0.000512545 
 
 
-
 
NC_007509  Bcep18194_C7112  Short-chain dehydrogenase/reductase SDR  42.21 
 
 
248 aa  180  2e-44  Burkholderia sp. 383  Bacteria  normal  normal  0.912642 
 
 
-
 
NC_008726  Mvan_2242  short-chain dehydrogenase/reductase SDR  47.9 
 
 
243 aa  180  2e-44  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.218659  normal 
 
 
-
 
NC_011370  Rleg2_6079  short-chain dehydrogenase/reductase SDR  45.31 
 
 
255 aa  179  4e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0631  short-chain dehydrogenase/reductase SDR  44.27 
 
 
265 aa  176  4e-43  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.76513  n/a   
 
 
-
 
NC_009636  Smed_1437  short-chain dehydrogenase/reductase SDR  42.4 
 
 
250 aa  173  1.9999999999999998e-42  Sinorhizobium medicae WSM419  Bacteria  normal  0.46093  decreased coverage  0.00000100027 
 
 
-
 
NC_009427  Saro_3667  short-chain dehydrogenase/reductase SDR  43.03 
 
 
259 aa  172  3.9999999999999995e-42  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3729  short-chain dehydrogenase/reductase SDR  44.81 
 
 
249 aa  172  3.9999999999999995e-42  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009050  Rsph17029_3640  short-chain dehydrogenase/reductase SDR  41.34 
 
 
251 aa  172  3.9999999999999995e-42  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.137586 
 
 
-
 
NC_009921  Franean1_3305  short-chain dehydrogenase/reductase SDR  40.5 
 
 
268 aa  171  1e-41  Frankia sp. EAN1pec  Bacteria  normal  normal  0.552464 
 
 
-
 
NC_012034  Athe_1156  3-oxoacyl-(acyl-carrier-protein) reductase  38.27 
 
 
248 aa  167  2e-40  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000536759  n/a   
 
 
-
 
NC_009901  Spea_2148  short-chain dehydrogenase/reductase SDR  37.34 
 
 
247 aa  166  2.9999999999999998e-40  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1857  short-chain dehydrogenase/reductase SDR  42.5 
 
 
245 aa  165  5.9999999999999996e-40  Nocardioides sp. JS614  Bacteria  normal  0.678216  n/a   
 
 
-
 
NC_013730  Slin_1373  3-oxoacyl-(acyl-carrier-protein) reductase  39.83 
 
 
248 aa  165  5.9999999999999996e-40  Spirosoma linguale DSM 74  Bacteria  normal  0.124306  normal 
 
 
-
 
NC_009484  Acry_1692  short-chain dehydrogenase/reductase SDR  42.21 
 
 
249 aa  165  8e-40  Acidiphilium cryptum JF-5  Bacteria  normal  0.912822  n/a   
 
 
-
 
NC_007794  Saro_1561  short chain dehydrogenase  43.15 
 
 
516 aa  164  1.0000000000000001e-39  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.636243  n/a   
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  40 
 
 
246 aa  164  1.0000000000000001e-39  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_008255  CHU_1085  3-oxoacyl-[acyl-carrier-protein] reductase  39.51 
 
 
248 aa  164  1.0000000000000001e-39  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.021981  normal  0.0468047 
 
 
-
 
NC_011894  Mnod_2723  short-chain dehydrogenase/reductase SDR  41.87 
 
 
251 aa  163  3e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1757  3-ketoacyl-(acyl-carrier-protein) reductase  40.66 
 
 
264 aa  163  3e-39  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1804  3-ketoacyl-(acyl-carrier-protein) reductase  40.66 
 
 
264 aa  163  3e-39  Mycobacterium sp. KMS  Bacteria  normal  normal  0.390803 
 
 
-
 
NC_008825  Mpe_A2921  dehydrogenase  42.45 
 
 
261 aa  163  3e-39  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.932836 
 
 
-
 
NC_009077  Mjls_1738  3-ketoacyl-(acyl-carrier-protein) reductase  40.66 
 
 
264 aa  163  3e-39  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  40 
 
 
246 aa  162  4.0000000000000004e-39  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2595  short-chain dehydrogenase/reductase SDR  40.78 
 
 
254 aa  162  5.0000000000000005e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2006  short-chain dehydrogenase/reductase SDR  45.38 
 
 
240 aa  162  5.0000000000000005e-39  Mycobacterium sp. JLS  Bacteria  normal  0.0400117  normal  0.51074 
 
 
-
 
NC_011892  Mnod_8330  short-chain dehydrogenase/reductase SDR  42.86 
 
 
255 aa  162  6e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0156  short-chain dehydrogenase/reductase SDR  38.11 
 
 
253 aa  161  8.000000000000001e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000000282185  n/a   
 
 
-
 
NC_014158  Tpau_3804  short-chain dehydrogenase/reductase SDR  41.87 
 
 
253 aa  161  9e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6972  short chain dehydrogenase  40.49 
 
 
251 aa  160  1e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0494  short-chain dehydrogenase/reductase SDR  38.78 
 
 
252 aa  160  1e-38  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  37.86 
 
 
246 aa  160  1e-38  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_008146  Mmcs_2023  short-chain dehydrogenase/reductase SDR  44.96 
 
 
240 aa  161  1e-38  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2394  short-chain dehydrogenase/reductase SDR  40.08 
 
 
270 aa  161  1e-38  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.883346  n/a   
 
 
-
 
NC_011831  Cagg_0178  short-chain dehydrogenase/reductase SDR  39.92 
 
 
247 aa  161  1e-38  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000108862  hitchhiker  0.000102827 
 
 
-
 
NC_008705  Mkms_2069  short-chain dehydrogenase/reductase SDR  44.96 
 
 
240 aa  161  1e-38  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1407  short-chain dehydrogenase/reductase SDR  40.74 
 
 
256 aa  161  1e-38  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5463  Short-chain dehydrogenase/reductase SDR  39.02 
 
 
251 aa  160  2e-38  Ralstonia eutropha JMP134  Bacteria  normal  0.230582  n/a   
 
 
-
 
NC_013037  Dfer_2588  3-oxoacyl-(acyl-carrier-protein) reductase  40.48 
 
 
248 aa  160  2e-38  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3258  3-ketoacyl-(acyl-carrier-protein) reductase  37.34 
 
 
246 aa  160  2e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.266771  n/a   
 
 
-
 
NC_012034  Athe_0213  short-chain dehydrogenase/reductase SDR  37.45 
 
 
264 aa  160  2e-38  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2515  short-chain dehydrogenase/reductase SDR  40 
 
 
250 aa  160  2e-38  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_005957  BT9727_3314  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  159  3e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  37.86 
 
 
246 aa  159  3e-38  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_011725  BCB4264_A3663  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  159  3e-38  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1723  3-oxoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
247 aa  160  3e-38  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000657249  n/a   
 
 
-
 
NC_009338  Mflv_4369  3-ketoacyl-(acyl-carrier-protein) reductase  38.78 
 
 
246 aa  160  3e-38  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0479  short-chain dehydrogenase/reductase SDR  38.78 
 
 
252 aa  159  3e-38  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  39.76 
 
 
254 aa  159  3e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_3563  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  159  3e-38  Bacillus cereus AH820  Bacteria  n/a    normal  0.0125613 
 
 
-
 
NC_008726  Mvan_3000  short-chain dehydrogenase/reductase SDR  40.66 
 
 
248 aa  159  3e-38  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.767749  normal  0.280666 
 
 
-
 
NC_008782  Ajs_2100  short-chain dehydrogenase/reductase SDR  39.51 
 
 
250 aa  159  3e-38  Acidovorax sp. JS42  Bacteria  normal  0.0527344  normal 
 
 
-
 
NC_011658  BCAH187_A3580  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  159  4e-38  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3264  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  159  5e-38  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  39.92 
 
 
249 aa  159  6e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2089  short-chain dehydrogenase/reductase SDR  34.84 
 
 
246 aa  159  6e-38  Clostridium cellulolyticum H10  Bacteria  normal  0.0163129  n/a   
 
 
-
 
NC_011772  BCG9842_B1654  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  159  6e-38  Bacillus cereus G9842  Bacteria  normal  normal  0.0676994 
 
 
-
 
NC_013739  Cwoe_4011  short-chain dehydrogenase/reductase SDR  40.59 
 
 
244 aa  159  6e-38  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  39.36 
 
 
254 aa  158  7e-38  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_013172  Bfae_04660  2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase  40.16 
 
 
261 aa  158  7e-38  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6108  Short-chain dehydrogenase/reductase SDR  36.95 
 
 
255 aa  158  8e-38  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4104  short-chain dehydrogenase/reductase SDR  40.95 
 
 
255 aa  158  8e-38  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.90531 
 
 
-
 
NC_007511  Bcep18194_B1510  Short-chain dehydrogenase/reductase SDR  40.87 
 
 
258 aa  158  9e-38  Burkholderia sp. 383  Bacteria  normal  0.623129  normal  0.55267 
 
 
-
 
NC_007760  Adeh_2748  3-oxoacyl-[acyl-carrier-protein] reductase  42.21 
 
 
250 aa  158  9e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6220  short-chain dehydrogenase/reductase SDR  41 
 
 
252 aa  158  9e-38  Burkholderia ambifaria AMMD  Bacteria  normal  0.621886  normal 
 
 
-
 
NC_014212  Mesil_2788  short-chain dehydrogenase/reductase SDR  42.11 
 
 
254 aa  158  9e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.743418 
 
 
-
 
NC_002620  TC0508  3-ketoacyl-(acyl-carrier-protein) reductase  37.19 
 
 
248 aa  157  1e-37  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_1835  3-oxoacyl-(acyl-carrier-protein) reductase  38.59 
 
 
244 aa  158  1e-37  Thermosipho melanesiensis BI429  Bacteria  normal  0.686329  n/a   
 
 
-
 
NC_003909  BCE_3570  3-ketoacyl-(acyl-carrier-protein) reductase  36.51 
 
 
246 aa  158  1e-37  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3349  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  157  1e-37  Bacillus anthracis str. Sterne  Bacteria  normal  0.06131  n/a   
 
 
-
 
NC_007530  GBAA_3610  3-ketoacyl-(acyl-carrier-protein) reductase  36.93 
 
 
246 aa  157  1e-37  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.767339  n/a   
 
 
-
 
NC_013743  Htur_2798  short-chain dehydrogenase/reductase SDR  37.3 
 
 
256 aa  158  1e-37  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  40.83 
 
 
269 aa  158  1e-37  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2712  short-chain dehydrogenase/reductase SDR  43.53 
 
 
286 aa  157  1e-37  Polaromonas naphthalenivorans CJ2  Bacteria  decreased coverage  0.0000174886  normal  0.399546 
 
 
-
 
NC_009338  Mflv_3281  short-chain dehydrogenase/reductase SDR  39.42 
 
 
248 aa  157  1e-37  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.846295 
 
 
-
 
NC_009484  Acry_0716  short-chain dehydrogenase/reductase SDR  39.51 
 
 
249 aa  157  2e-37  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  40.57 
 
 
269 aa  157  2e-37  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
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