| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1258 |
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| Symbol | |
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| ID | 5711816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1304262 |
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| End bp | 1305005 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267170 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001532601 |
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| Protein GI | 159043807 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.203668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCAAA CACCGCTGGC ATTGATCACC GGGGGGGCGC AGGGGATCGG ATACGCCTGT
GCCGAGGCGC TCGCCGCTGA GGGCGCGCGG ATCATCCTTG CGGACATTCA GGACAGTGTG
CAGGAGGCTG CGGCGCGCCT CGGCGGTGCG GGATACCTGT GCGACATGGG GGATGCCGCG
GCGGTCGGCG CGTTGTTCGA CCGGATCGAG GCGGAGCACG GCGCGGTCAC CTACCTTGTC
AACAACGCGG GGATCGCGGC GCCGGGCGAC TTTCTCGATT ATGATCTGGC GACCTTCGAC
CGGGTGCTCG ATATCAACCT TCGCGGCGTG TTCGTGGCCA CCCAGCGGGC CGGGCGCAGC
ATGGTGGCAC ACGGCATCAA GGGGGCTGTC GTGAACATGT CCTCTATCAA CGCGCAGGTG
GCGATCCCGT CGATTCCGGC CTATTGCGCC TCTAAGGGCG GGCTGATGCA GCTGACGAAG
GTCGCGGCCC TTGCGCTTGC CCCCCACGGC ATCCGCGTGA ACGCGGTCGG GCCGGGGTCC
ATCGATACCG AGATGATGGC GGGGGTGAAT GCCAACCCGG AGGCCATGAA CATGGTCCTG
TCGCGCACGC CCCTGAAACG GGTCGGGACC GCGCAGGAGA TCGCGAACGT GGTCGCATTT
CTGTGCTCCG ACAAAGCCAG CTATGTCACG GGCGAGACGA TCTATGTGGA CGGAGGGCGC
CTGGGCCTGA ACTACACCTG CTGA
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| Protein sequence | MSQTPLALIT GGAQGIGYAC AEALAAEGAR IILADIQDSV QEAAARLGGA GYLCDMGDAA
AVGALFDRIE AEHGAVTYLV NNAGIAAPGD FLDYDLATFD RVLDINLRGV FVATQRAGRS
MVAHGIKGAV VNMSSINAQV AIPSIPAYCA SKGGLMQLTK VAALALAPHG IRVNAVGPGS
IDTEMMAGVN ANPEAMNMVL SRTPLKRVGT AQEIANVVAF LCSDKASYVT GETIYVDGGR
LGLNYTC
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