Gene Cpin_4842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4842 
Symbol 
ID8361018 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6049018 
End bp6049767 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content48% 
IMG OID644966992 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003124477 
Protein GI256423824 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00384997 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000208801 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATACGA CAAAGAAACT GGCAATCGTT ACCGGCGGTG GTTCCGGCAT CGGATTCGCC 
ATAGCAACAC AGTTTGTTCA GCATAATATT TATACGGTCA TCGTAGGCCG GGATGAACAG
AAATTGCGGA ATGCCTGCGA ACAGCTTGGT CCCGGCAGTG AATGTTATAC CTGCGATTTG
AGTGATCTGA ATGCTATTCC TGTCATGGTT GACATGATCA TCAGCAGGTA TGGTCATATA
GATATCCTAG TCAACAATGC CGGCATCAAT ATGAAGAAAT CGTTTACGGA AGTGACGGAC
GAAGAGTTTC AGGATATTCT GCAGACGAAC GTGACCGCTG TTTTTGCTTT ATCCCGTGAG
GTAGTAAAAC ATCAGCTGGA AAAGAAGATA AGCGGTTGCC TCATTAACAT CAGCTCTATG
GCTTCGCAAT ATGGTATTCC GAAAGTAATC GCTTACACTG CATCAAAATC GGCGATAGAG
GGTATGACGA AAGCGATGGC GACGGAATTG TCACCTTATG GTATCCGGAT TAATTGTATA
GCGCCGGGGT TTATTGCTAC GGATATGAGT GCGAAGGCGC TGGAATCAGA TCCTGAAAGG
AAAGCGAAGG CTTTGGGCAG AACGCCGCTG GGGTATCTGG GGCGGCCGGC AGATATTGGC
GCGGCCGCAT TATTCCTGGC TTCGGATGCT GCGCAATATA TCACAGGGGT GGTGTTGCCG
GTAGATGGCG GGAATGCCAT CGGATTCTGA
 
Protein sequence
MNTTKKLAIV TGGGSGIGFA IATQFVQHNI YTVIVGRDEQ KLRNACEQLG PGSECYTCDL 
SDLNAIPVMV DMIISRYGHI DILVNNAGIN MKKSFTEVTD EEFQDILQTN VTAVFALSRE
VVKHQLEKKI SGCLINISSM ASQYGIPKVI AYTASKSAIE GMTKAMATEL SPYGIRINCI
APGFIATDMS AKALESDPER KAKALGRTPL GYLGRPADIG AAALFLASDA AQYITGVVLP
VDGGNAIGF