| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4933 |
|---|
| Symbol | |
|---|
| ID | 6179357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2080140 |
|---|
| End bp | 2080889 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684686 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001811596 |
|---|
| Protein GI | 172063945 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.504822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCTCG ACAACAAGAC CATCATCGTG ACCGGCGCGG CGTCGCCGCG CGGCATCGGC
AAGGCCACTG CCCGCGCGCT CGCCGCCCAC GGCGCGCGCA TTGCGATTCT CGACCTTCGT
CGCGAAGACG CCGAGGCGGC TGCCGCCGAA CTCGGGACGA ACCATCTCGG GCTGGCTTGC
GACGTGACCG ATCGCGATGC GTGCGTGGCC GCGGCCCGCG CGACGCTGGA GCACTATGGG
CGCATCGACG GCCTCGTGAA CAACGCCGGC ATCACGCAGC CCGTGCGCAC GCTGGACATC
TCCGGGCGCG ACTTCGATGC GATCGTCGAC GTGAACCTGC GCGGCACGCT GTACATGTCG
CAAGCGGTGC TGCCCGCGAT GAAGGAGCAG CGGGGCGGCA GCATCGTCTG CATGTCGTCG
GTGTCCGCGC AGCGCGGCGG CGGCATCTTC GGCGGGCCGC ACTACAGCGC CGCCAAGGCC
GGCGTGCTTG GCCTCGCGAA GGCGATGGCA CGTGAATTCG GCGCCGACCA TATCCGTATC
AATTCGATCA CGCCGGGCCT GATCCAGACC GACATCACCG GGGACAAGCT GACGCCGGAA
ATGCGCGAGG AGATCATCAA GGGCATTCCG CTCGGCCGCC TCGGCGATGC CGCCGATGTC
GCCAATGCGT GCCTGTTCCT GCTGAGCGAC CTGTCGAGCT ACCTGACGGG CATCACGCTC
GACGTCAATG GCGGGATGCT GATTCACTGA
|
|---|
| Protein sequence | MLLDNKTIIV TGAASPRGIG KATARALAAH GARIAILDLR REDAEAAAAE LGTNHLGLAC
DVTDRDACVA AARATLEHYG RIDGLVNNAG ITQPVRTLDI SGRDFDAIVD VNLRGTLYMS
QAVLPAMKEQ RGGSIVCMSS VSAQRGGGIF GGPHYSAAKA GVLGLAKAMA REFGADHIRI
NSITPGLIQT DITGDKLTPE MREEIIKGIP LGRLGDAADV ANACLFLLSD LSSYLTGITL
DVNGGMLIH
|
|---|
| |