Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3548 |
Symbol | |
ID | 4024062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3943975 |
End bp | 3944748 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637963752 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_570672 |
Protein GI | 91978013 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCCA ACCCGTTCGA TCTCACCGGC AAGGTCGCCG TGATCACCGG CTCGTCGCGC GGCATCGGTC GCGCATCGGC GGAATTGTTG GCGAAGCTCG GCGCCAGGGT GGTAATCTCG AGCCGCAAGG CCGAAGCCTG CGAGGAGGTG GCCGAAGGCA TCCGCAAGGA GGGTGGCGAT GCGCATGTGA TCGCCTGCAA CATTTCCCGC CGCGCCGAAG TCGAGGCGCT GATCGAAGGC GCCAACGCCA AATACGGCAA GATCGACATC CTGGTCTGCA ACGCCGCGGT GAACCCTTAT TACGGGCCGC TGCTCGACAT CCCCGATGAG GCGTTCGACA AGATCATGAA CTCGAACGTG AAGAGCAATT TGTGGCTGTG CGCGCTGACG ATGCCGCAGA TGGCGGCGCG CGGCGGCGGC TCGGTGGTGA TCATCTCGTC GATCGGCGGG CTGCGCGGCT CGACCGTGAT CGGCGCCTAC GGGATTTCCA AGGCGGCGGA TTTCGCGTTG TGCCGCAGCC TCGCCGGCGA ATGGGGCGAG CGGGGCGTGC GGGTCAATTG CGTCGCGCCG GGCCTGGTCA AGACCGATTT CGCCCGCGCG CTGTGGGAAG ACGAGGCGGT GTTGAAGCGC CGCACCGCCG GCACGCCGCT GCGCCGGATC GGCGAACCGC ACGAGATCGC CGGCGCCGTC GCCTATCTGG GCTCCGACGC CTCGACCTTC ATGACCGGCC AGACCATTGT GATCGACGGC GGCGTCACCA CCGCGTCGGT GTAG
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Protein sequence | MTANPFDLTG KVAVITGSSR GIGRASAELL AKLGARVVIS SRKAEACEEV AEGIRKEGGD AHVIACNISR RAEVEALIEG ANAKYGKIDI LVCNAAVNPY YGPLLDIPDE AFDKIMNSNV KSNLWLCALT MPQMAARGGG SVVIISSIGG LRGSTVIGAY GISKAADFAL CRSLAGEWGE RGVRVNCVAP GLVKTDFARA LWEDEAVLKR RTAGTPLRRI GEPHEIAGAV AYLGSDASTF MTGQTIVIDG GVTTASV
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