Gene RPD_3548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3548 
Symbol 
ID4024062 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3943975 
End bp3944748 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content67% 
IMG OID637963752 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_570672 
Protein GI91978013 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCCA ACCCGTTCGA TCTCACCGGC AAGGTCGCCG TGATCACCGG CTCGTCGCGC 
GGCATCGGTC GCGCATCGGC GGAATTGTTG GCGAAGCTCG GCGCCAGGGT GGTAATCTCG
AGCCGCAAGG CCGAAGCCTG CGAGGAGGTG GCCGAAGGCA TCCGCAAGGA GGGTGGCGAT
GCGCATGTGA TCGCCTGCAA CATTTCCCGC CGCGCCGAAG TCGAGGCGCT GATCGAAGGC
GCCAACGCCA AATACGGCAA GATCGACATC CTGGTCTGCA ACGCCGCGGT GAACCCTTAT
TACGGGCCGC TGCTCGACAT CCCCGATGAG GCGTTCGACA AGATCATGAA CTCGAACGTG
AAGAGCAATT TGTGGCTGTG CGCGCTGACG ATGCCGCAGA TGGCGGCGCG CGGCGGCGGC
TCGGTGGTGA TCATCTCGTC GATCGGCGGG CTGCGCGGCT CGACCGTGAT CGGCGCCTAC
GGGATTTCCA AGGCGGCGGA TTTCGCGTTG TGCCGCAGCC TCGCCGGCGA ATGGGGCGAG
CGGGGCGTGC GGGTCAATTG CGTCGCGCCG GGCCTGGTCA AGACCGATTT CGCCCGCGCG
CTGTGGGAAG ACGAGGCGGT GTTGAAGCGC CGCACCGCCG GCACGCCGCT GCGCCGGATC
GGCGAACCGC ACGAGATCGC CGGCGCCGTC GCCTATCTGG GCTCCGACGC CTCGACCTTC
ATGACCGGCC AGACCATTGT GATCGACGGC GGCGTCACCA CCGCGTCGGT GTAG
 
Protein sequence
MTANPFDLTG KVAVITGSSR GIGRASAELL AKLGARVVIS SRKAEACEEV AEGIRKEGGD 
AHVIACNISR RAEVEALIEG ANAKYGKIDI LVCNAAVNPY YGPLLDIPDE AFDKIMNSNV
KSNLWLCALT MPQMAARGGG SVVIISSIGG LRGSTVIGAY GISKAADFAL CRSLAGEWGE
RGVRVNCVAP GLVKTDFARA LWEDEAVLKR RTAGTPLRRI GEPHEIAGAV AYLGSDASTF
MTGQTIVIDG GVTTASV