| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3118 |
|---|
| Symbol | |
|---|
| ID | 4019644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3745791 |
|---|
| End bp | 3746543 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637957169 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_564118 |
|---|
| Protein GI | 91794467 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA GTGGTAAGTT ATATTTAGTT ACAGGCGCTT CGGTCGATTC AGATATTGGC
TTTGCTATCT GTAAAAAGTT AGATGAATTG GGTGCAACTT TGATATTGGT TTCACGTCGA
GAAGCCTCAT TGAAAGATAC CGCCCAACAA TTGACGGCTA ACAAACATCA TATTTGCCCA
TTTGATTTGA GCAAGCTAGA TGAGATCCCT ATTTGGGTGA ATAATCTTGT GAAGCAGTAT
GGTGCCGTTG ATGGATTGAT CCATAGTGCA AGCTACCAAG GGTATAGCCC TTTGAGAGGC
GTTACTGGGC AGCAGATCAG TAATTATTTT GATATTAATT TTTCAGCGGC CGTTATGCTC
ACCTCTTCAT TATCAAAAGC CCGCCATTTT AACCCTAATG CAAGTTTTGT GTTTATCGGT
TCAGCGGCAG GCGTTAGGGG GCTGAAAGCC CGCACTTTAT ATGCGGCATC TAAAGCAGCG
TTGCATTCGT TAGTTCGCTC AGCAGCCCTA GAGCTTGCCA GTAAATCAAT CCGAGTGAAT
TGCGTTGCTC CAGCAGTAGT GTCAGGTGCA AAGGCCGAAA AGCAATTTGA AATATTAGGT
GAGGCACAAA CTAAAATACT CATAGATGCC CATCCTTTAG GACTCAGTAA GCCTGAAGAT
GTAGCCAATA GCGTTAGTTT CTTGCTTAGT GATTTAAGTG CTAAAACGAC AGGAATGACG
TTAACCGTTG ATGGAGGGTT CCTTGCAGGA TAA
|
|---|
| Protein sequence | MDFSGKLYLV TGASVDSDIG FAICKKLDEL GATLILVSRR EASLKDTAQQ LTANKHHICP
FDLSKLDEIP IWVNNLVKQY GAVDGLIHSA SYQGYSPLRG VTGQQISNYF DINFSAAVML
TSSLSKARHF NPNASFVFIG SAAGVRGLKA RTLYAASKAA LHSLVRSAAL ELASKSIRVN
CVAPAVVSGA KAEKQFEILG EAQTKILIDA HPLGLSKPED VANSVSFLLS DLSAKTTGMT
LTVDGGFLAG
|
|---|
| |