| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1332 |
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| Symbol | |
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| ID | 4924138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1543365 |
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| End bp | 1544117 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640162872 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001093460 |
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| Protein GI | 127512263 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTCA CCAACAAACT TTATATAGTC ACAGGCGCTG CTGCGGACTC AGATATTGGC
CTCGCAATTT GTCAAAAGCT TGATAATTGT GGGGTAAAAT TAATTCTTGT GGGACGTCGA
GAACACGCAC TGCAGGAGAC ATTGAGTCTG CTGAAGGGGA AAGAACACAT AGTGTGCCCT
TTTGACCTTA GTGAACTGCA AAATATTACG ACTTGGGCAA AATCTATCGT CACGCAATAT
GGTGCGATAG ATGGGCTAGT ACATAGCGCG AGCTTTCAAG GGTACAGCCC ACTAAGAGGT
ATTACTCCCA AGCAGATCCA TCAATACCTA GATATAAACT TCTCTGCTGC TGTTATGCTT
ACCTCTGCCT TTTCCAAAGC CAGACACTTT AATCCAGGGG CAAGTTTTAT CTTCATCGGC
TCTGCGGCTG GACAGAGGGG GCTAAAAGCA AGAACGCTCT ACGCCGCATC TAAGGCTGCA
CTCTCGTCTA TGGTACAGTC GGCGGCCTTA GAGCTAGCCG CTAAACAGAT TAGAGTAAAT
TGCGTCGCCC CGGCTCTGGT ATCTGGTGCC AAGGCTGAAC AACAATTTGC TACGCTCGGC
GTGGAGCTAA GCCAACGATT AATCGAAGCC CATCCACTTG GACTAAGCAC ACCAGAAGAT
GTCGCAAACA GTGTTTACTT TTTATTAAGC GATCTAAGTC GCAATACTAC TGGCATCACG
CTCGCTGTAG ATGGTGGATT CCTTGCCGGC TAA
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| Protein sequence | MDLTNKLYIV TGAAADSDIG LAICQKLDNC GVKLILVGRR EHALQETLSL LKGKEHIVCP
FDLSELQNIT TWAKSIVTQY GAIDGLVHSA SFQGYSPLRG ITPKQIHQYL DINFSAAVML
TSAFSKARHF NPGASFIFIG SAAGQRGLKA RTLYAASKAA LSSMVQSAAL ELAAKQIRVN
CVAPALVSGA KAEQQFATLG VELSQRLIEA HPLGLSTPED VANSVYFLLS DLSRNTTGIT
LAVDGGFLAG
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