| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5225 |
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| Symbol | |
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| ID | 5319527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 184816 |
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| End bp | 185589 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640777002 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001313934 |
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| Protein GI | 150377339 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCCAC CCTTCTTAAA GAAGGTCGCC GCGGTTACCG GCGCAGGTTC TGGAATCGGT
CGGGCGATCG CACTCGGGCT CGCTCGTGAG GGCGCGACGG TGCATCTCGC CGATCGCAAT
GCCGATGGGC TTGCCGAGAC CGCAGCACTC ATCCGCGCTG AGGATGGCCG GGCATTCACC
ACCGAACTCG ACGTATCGAG CGAGGTACAG GTGGTCGGAT GGGTCGAGCA GATCGGCTCC
ATATCGGGCC GGCTTGATGC CGCCTTCAAC AATGCCGGCA TCACGGGCCC GGCAAAGCGG
ATCGAGCACT ACCCCCTTGA GGATTTCCAG CGGGTGGTAG CCGTCAACCT GCAGGGCGTG
TTTCTCGGGA TGAAGCACCA GATCCCGCTC ATCAAGCGCA GTGGCGGCGG GTCGATCGTG
AACACCGCGT CCGTCGCCGC TTTGACCGGG CCGGGAGGAA TGAGTGCTTA TGCGGCTTCC
AAGCATGGCG TTCAGGGCCT GACCCGCGTT GTCGCTATGG AAAACGCGGC GGATGGCATC
CGGGTCAACG CGATCGCGCC GGGTTGGACC GAAACACCGA TGGTGGCGGC AAATAGCCAG
CAGAACCCCG GTTTTGCGGC CCTCACTCAG ACCGCCATTC CCGCCAAACG CGGCGGCAGG
CCGGAAGAGA TCGCGGCAGC CGCGATCTGG CTCGCCTCGG ACACCGCCTC CTATGTCACC
GGACAGATGC TGACCGTCGA TGGCGGCATG ACGATCGGTG GTTTTGAACT CTGA
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| Protein sequence | MFPPFLKKVA AVTGAGSGIG RAIALGLARE GATVHLADRN ADGLAETAAL IRAEDGRAFT
TELDVSSEVQ VVGWVEQIGS ISGRLDAAFN NAGITGPAKR IEHYPLEDFQ RVVAVNLQGV
FLGMKHQIPL IKRSGGGSIV NTASVAALTG PGGMSAYAAS KHGVQGLTRV VAMENAADGI
RVNAIAPGWT ETPMVAANSQ QNPGFAALTQ TAIPAKRGGR PEEIAAAAIW LASDTASYVT
GQMLTVDGGM TIGGFEL
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