| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4922 |
|---|
| Symbol | |
|---|
| ID | 3370474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5835686 |
|---|
| End bp | 5836432 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637655291 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_237987 |
|---|
| Protein GI | 66048146 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGTT TACAAGGCAA GCGTACTCTC ATCATTGGCG GTACAAGCGG CATCGGTCTG
GAGACCGCCA AGCAATTTCT CGCCGAAGGC GCACGCGTGA TCGTCACAGG TGTTAATCCT
GAGTCCATGG CAAATGCTCA AGCTATTTTA GGGAGCGATG TCTTGGTGCT GCGAGCCGAC
TCAGCGAGTG TCGCAGCCCA GAAGGAGCTG GCGCAGGCTG TTCAGTCTCA TTACGGGCAG
CTCGACATTG CCTTTCTCAA TGCTGGCGTA TCCGTCTGGA AGCCGATCGA AGAATGGAAC
GAGGAGATGT TTGACCGCTC CTTTGACATC AATGTCAAAG GCCCTTACTT CCTCCTGCAA
GCACTGCTGC CGGTCTTCTC AAACCCTGCA TCGGTGGTTC TTAACACCTC GATCAGTGCG
CACCTGGGCG CCCCGCGCTC ATCCATTTAT GCCGCAACAA AGGCGGCCTT TCTAAGCATG
TCGAAAACGC TCTCTAGCGA GCTTCTTCCG CGTGGTGTAC GAGTAAATGC GGTCAGCCCT
GGGCCCATCG ACACGCCGCT GTACGACAAG GCGGGTATTC CCGATGCATA CCGCGAGCAG
GTCAACAAAG ATATTGCTGC GACTATCCCA TTTGGCCGTT TTGGCACGCC TGAGGAAGTA
GCTAAGGCGG TGGTGTACCT CGCGTCGGAC GAGTCTCGTT GGACGTTGGG AACAGAAATT
ATCGTCGATG GTGGTCGCTC GCTTTAA
|
|---|
| Protein sequence | MSRLQGKRTL IIGGTSGIGL ETAKQFLAEG ARVIVTGVNP ESMANAQAIL GSDVLVLRAD
SASVAAQKEL AQAVQSHYGQ LDIAFLNAGV SVWKPIEEWN EEMFDRSFDI NVKGPYFLLQ
ALLPVFSNPA SVVLNTSISA HLGAPRSSIY AATKAAFLSM SKTLSSELLP RGVRVNAVSP
GPIDTPLYDK AGIPDAYREQ VNKDIAATIP FGRFGTPEEV AKAVVYLASD ESRWTLGTEI
IVDGGRSL
|
|---|
| |