Gene Daci_5639 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5639 
Symbol 
ID5751259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6270459 
End bp6271211 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content60% 
IMG OID641300772 
Productshort chain dehydrogenase 
Protein accessionYP_001566653 
Protein GI160901071 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.308131 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.00207751 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGCGCT TGCAAGGTAA ACGTACTCTC ATCACTGGCG GCACGAGTGG CATCGGGCTG 
GAAACCGCAA AGCAGTTTCT GGAGGAAGGC GCCCGCGTCA TCGTCACGGG CGTAAATCCC
GATTCGATCG CAAAGGCACA AGCCGAACTG GGCCCCGAAG TTCAGGTGCT GCGCGCCGAC
TCGGCCAGCG TTGCTGCCCA AAAGGAATTG GCACAGATCA TCAAGGAGCA CTACGGCCGA
CTGGACATTG CCTTCCTCAA TGCCGGCGTA TCTGTCTGGC TGCCCATCGA GGAATGGTCG
GAAGAGATGT TTGACCGCTC TTTCGACATC AACGTCAAGG GCCCCTACTT CCTGATGCAG
GCACTGCTCC CGATCTTCGC GAATCCCGCC TCCGTCGTGC TCAACACCTC CGTCAGCGCG
CATGCAGGCG CAGCCCGCTC GTCCGTGTAT GCCGCCACGA AGGCCGCATT CTTGAACATG
TCGAAGACGC TTTCGACTGA ATTGCTGGGA CGTGGCATCC GTGTCAATGC GGTCAGCCCC
GGACCGATCG AAACGCCGCT GTACGACAAG CTCGGGATTC CGGACGCGTA CCGCGAGCAG
GTCAACAAAG ATATTGCGGC GAGCATTCCG CTTGGGCGCT TCGGCACGGC CGACGAGGTG
ACTAAAGCCG TGCTGTATCT GGCTTCCGAC GAGTCGCGTT GGACGGTGGG CTCTGAAATC
GTCGTTGACG GCGGCCGCCT GCTCAATGGT TAA
 
Protein sequence
MSRLQGKRTL ITGGTSGIGL ETAKQFLEEG ARVIVTGVNP DSIAKAQAEL GPEVQVLRAD 
SASVAAQKEL AQIIKEHYGR LDIAFLNAGV SVWLPIEEWS EEMFDRSFDI NVKGPYFLMQ
ALLPIFANPA SVVLNTSVSA HAGAARSSVY AATKAAFLNM SKTLSTELLG RGIRVNAVSP
GPIETPLYDK LGIPDAYREQ VNKDIAASIP LGRFGTADEV TKAVLYLASD ESRWTVGSEI
VVDGGRLLNG