More than 300 homologs were found in PanDaTox collection
for query gene Gbem_0432 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_0432  cyclic nucleotide-binding protein  100 
 
 
860 aa  1724    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3539  cyclic nucleotide-binding protein  65.3 
 
 
857 aa  1080    Geobacter lovleyi SZ  Bacteria  normal  0.0290793  n/a   
 
 
-
 
NC_007413  Ava_3536  cyclic nucleotide-binding domain-containing protein  26.36 
 
 
841 aa  209  2e-52  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3170  cyclic nucleotide-binding protein  28.45 
 
 
785 aa  209  2e-52  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0158223  n/a   
 
 
-
 
NC_011729  PCC7424_3607  cyclic nucleotide-binding protein  25.31 
 
 
841 aa  207  5e-52  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.29767 
 
 
-
 
NC_007604  Synpcc7942_1527  nitrogen assimilation regulatory protein  26.78 
 
 
838 aa  202  1.9999999999999998e-50  Synechococcus elongatus PCC 7942  Bacteria  normal  decreased coverage  0.000360333 
 
 
-
 
NC_011884  Cyan7425_0745  cyclic nucleotide-binding protein  26.21 
 
 
837 aa  201  7e-50  Cyanothece sp. PCC 7425  Bacteria  normal  0.274315  normal  0.0506496 
 
 
-
 
NC_008820  P9303_29251  4Fe-4S ferredoxin, iron-sulfur binding protein  26.27 
 
 
695 aa  151  6e-35  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  32.94 
 
 
448 aa  144  5e-33  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1028  response regulator receiver protein  33.58 
 
 
439 aa  141  6e-32  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.163891  n/a   
 
 
-
 
NC_007644  Moth_1713  sigma-54 dependent trancsriptional regulator  28.5 
 
 
748 aa  140  1e-31  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00000552259  normal 
 
 
-
 
NC_011830  Dhaf_2488  4Fe-4S ferredoxin iron-sulfur binding domain protein  28.03 
 
 
462 aa  139  2e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0674  two-component response regulator CbrB  32.06 
 
 
453 aa  139  2e-31  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0916838  normal 
 
 
-
 
NC_008554  Sfum_0621  two component, sigma54 specific, Fis family transcriptional regulator  31.23 
 
 
472 aa  139  3.0000000000000003e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3217  sigma-54 dependent DNA-binding response regulator  36.56 
 
 
501 aa  135  1.9999999999999998e-30  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  32.4 
 
 
444 aa  136  1.9999999999999998e-30  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  32.2 
 
 
457 aa  136  1.9999999999999998e-30  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2667  sigma-54 factor interaction domain-containing protein  34.63 
 
 
551 aa  135  1.9999999999999998e-30  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  32.4 
 
 
444 aa  135  3e-30  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1532  sigma-54 dependent trancsriptional regulator  32.23 
 
 
491 aa  135  3.9999999999999996e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.497768  normal 
 
 
-
 
NC_007005  Psyr_3461  helix-turn-helix, Fis-type  31.89 
 
 
491 aa  134  6.999999999999999e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.476212  normal 
 
 
-
 
NC_004578  PSPTO_1954  transcriptional regulator FleQ  31.89 
 
 
491 aa  134  7.999999999999999e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.145885  n/a   
 
 
-
 
NC_007347  Reut_A2632  sigma-54 dependent trancsriptional regulator  33.33 
 
 
457 aa  133  1.0000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2554  type 4 fimbriae expression regulatory protein PilR  30.99 
 
 
452 aa  133  1.0000000000000001e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1166  two component, sigma54 specific, transcriptional regulator, Fis family  30.42 
 
 
447 aa  133  1.0000000000000001e-29  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  30 
 
 
448 aa  133  2.0000000000000002e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  30.53 
 
 
455 aa  132  2.0000000000000002e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_007512  Plut_1527  Fis family transcriptional regulator  33.2 
 
 
537 aa  132  2.0000000000000002e-29  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1785  NifA subfamily transcriptional regulator  31.32 
 
 
507 aa  133  2.0000000000000002e-29  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0590  two component, sigma54 specific, transcriptional regulator, Fis family  30.15 
 
 
440 aa  132  3e-29  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2667  sigma-54 dependent transcriptional regulator/sensory box protein  30.47 
 
 
668 aa  132  3e-29  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3032  NifA subfamily transcriptional regulator  31.8 
 
 
532 aa  132  4.0000000000000003e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_2353  phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator  30.11 
 
 
668 aa  131  5.0000000000000004e-29  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2402  transcriptional regulator, Fis family  33.33 
 
 
641 aa  131  5.0000000000000004e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03166  hypothetical protein  30 
 
 
488 aa  130  1.0000000000000001e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_33440  sigma54-dependent activator protein  31.95 
 
 
493 aa  130  1.0000000000000001e-28  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2207  sigma54 specific transcriptional regulator, Fis family  35.19 
 
 
653 aa  130  1.0000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000576072 
 
 
-
 
NC_012560  Avin_47100  sigma54-dependent activator protein  33.07 
 
 
517 aa  130  1.0000000000000001e-28  Azotobacter vinelandii DJ  Bacteria  normal  0.536607  n/a   
 
 
-
 
NC_013501  Rmar_0508  transcriptional regulator, NifA subfamily, Fis Family  31.38 
 
 
495 aa  130  1.0000000000000001e-28  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4373  sigma54 specific transcriptional regulator, Fis family  31.23 
 
 
491 aa  129  2.0000000000000002e-28  Pseudomonas putida KT2440  Bacteria  normal  normal  0.943128 
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  30.38 
 
 
458 aa  130  2.0000000000000002e-28  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2893  transcriptional regulator, Fis family  34.66 
 
 
630 aa  129  2.0000000000000002e-28  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359739 
 
 
-
 
NC_007514  Cag_1228  Fis family transcriptional regulator  33.06 
 
 
549 aa  130  2.0000000000000002e-28  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3934  sigma-54 dependent trancsriptional regulator  31.23 
 
 
491 aa  129  2.0000000000000002e-28  Pseudomonas putida GB-1  Bacteria  normal  0.532257  normal 
 
 
-
 
NC_010501  PputW619_3698  sigma-54 dependent trancsriptional regulator  30.9 
 
 
491 aa  129  2.0000000000000002e-28  Pseudomonas putida W619  Bacteria  normal  0.288124  normal 
 
 
-
 
NC_007517  Gmet_2145  two component, sigma54 specific, Fis family transcriptional regulator  32.17 
 
 
446 aa  129  2.0000000000000002e-28  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3196  Fis family transcriptional regulator  34.17 
 
 
494 aa  129  2.0000000000000002e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2340  PAS modulated sigma54 specific transcriptional regulator, Fis family  33.21 
 
 
476 aa  129  2.0000000000000002e-28  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1494  sigma-54 dependent trancsriptional regulator  31.23 
 
 
491 aa  129  2.0000000000000002e-28  Pseudomonas putida F1  Bacteria  normal  normal  0.959617 
 
 
-
 
NC_014151  Cfla_3683  4Fe-4S ferredoxin iron-sulfur binding domain protein  26.4 
 
 
476 aa  129  2.0000000000000002e-28  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2312  sigma 54 dependent transcription regulator  30.57 
 
 
493 aa  129  2.0000000000000002e-28  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  31.8 
 
 
463 aa  129  2.0000000000000002e-28  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  30.68 
 
 
457 aa  129  3e-28  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  30.72 
 
 
461 aa  129  3e-28  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_007925  RPC_0884  NifA subfamily transcriptional regulator  32.68 
 
 
539 aa  129  3e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.871675 
 
 
-
 
NC_010730  SYO3AOP1_1750  two component, sigma54 specific, transcriptional regulator, Fis family  34.5 
 
 
466 aa  129  3e-28  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1920  transcriptional regulator, NifA subfamily, Fis Family  29.73 
 
 
543 aa  128  4.0000000000000003e-28  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0127788  n/a   
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  31.36 
 
 
470 aa  128  4.0000000000000003e-28  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  30.38 
 
 
458 aa  128  4.0000000000000003e-28  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  30.37 
 
 
448 aa  128  5e-28  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0274  sigma-54 dependent transcriptional regulator/sensory box protein  32.93 
 
 
474 aa  127  7e-28  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2387  two component, sigma-54 specific, Fis family transcriptional regulator  30.77 
 
 
510 aa  127  8.000000000000001e-28  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  29.85 
 
 
472 aa  127  8.000000000000001e-28  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  31 
 
 
470 aa  127  9e-28  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_011992  Dtpsy_0164  sigma54 specific transcriptional regulator, Fis family  33.74 
 
 
450 aa  127  9e-28  Acidovorax ebreus TPSY  Bacteria  normal  0.342124  n/a   
 
 
-
 
NC_008782  Ajs_0146  sigma-54 dependent trancsriptional regulator  34.31 
 
 
459 aa  127  1e-27  Acidovorax sp. JS42  Bacteria  normal  normal  0.742059 
 
 
-
 
NC_008751  Dvul_0902  Fis family transcriptional regulator  33.08 
 
 
551 aa  126  1e-27  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0336784  normal 
 
 
-
 
NC_008345  Sfri_1020  two component, sigma54 specific, transcriptional regulator, Fis family protein  31.03 
 
 
516 aa  127  1e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2070  two component, sigma54 specific, transcriptional regulator, Fis family  30.33 
 
 
459 aa  127  1e-27  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1721  flagellar regulatory protein A  30.19 
 
 
488 aa  127  1e-27  Vibrio cholerae O395  Bacteria  decreased coverage  0.000000009386  n/a   
 
 
-
 
NC_013456  VEA_002811  flagellar regulatory protein FleQ  29.06 
 
 
488 aa  126  2e-27  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02226  sigma-54 interacting response regulator transcription regulator protein  30.74 
 
 
491 aa  126  2e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1748  transcriptional regulator, NifA, Fis Family  28.75 
 
 
542 aa  126  2e-27  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  34.24 
 
 
451 aa  125  2e-27  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_013132  Cpin_3620  two component, sigma54 specific, transcriptional regulator, Fis family  31.09 
 
 
449 aa  125  2e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.351229  hitchhiker  0.00000838354 
 
 
-
 
NC_009675  Anae109_2442  two component, sigma54 specific, Fis family transcriptional regulator  30.94 
 
 
480 aa  126  2e-27  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3672  nitrogen metabolism transcriptional regulator, NtrC, Fis family  30.58 
 
 
504 aa  126  2e-27  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.0002131  normal 
 
 
-
 
NC_002939  GSU1039  sigma-54 dependent DNA-binding response regulator  33.08 
 
 
566 aa  125  3e-27  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  31.11 
 
 
469 aa  125  3e-27  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0689  transcriptional regulator, NifA subfamily, Fis Family  30.56 
 
 
544 aa  125  3e-27  Chlorobium limicola DSM 245  Bacteria  normal  0.430174  n/a   
 
 
-
 
NC_008740  Maqu_2826  two component, sigma54 specific, Fis family transcriptional regulator  32.31 
 
 
461 aa  125  3e-27  Marinobacter aquaeolei VT8  Bacteria  normal  0.244879  n/a   
 
 
-
 
NC_008639  Cpha266_1919  Fis family transcriptional regulator  31.02 
 
 
545 aa  125  3e-27  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1326  two component, sigma54 specific, Fis family transcriptional regulator  32.64 
 
 
485 aa  125  4e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0976  two component, sigma54 specific, transcriptional regulator, Fis family  30.08 
 
 
442 aa  125  4e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00434157  normal  0.514512 
 
 
-
 
NC_008740  Maqu_2001  sigma-54 dependent trancsriptional regulator  31.5 
 
 
482 aa  125  4e-27  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4152  two component, sigma54 specific, Fis family transcriptional regulator  31.38 
 
 
480 aa  125  5e-27  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.038607 
 
 
-
 
NC_011126  HY04AAS1_1157  transcriptional regulator, NifA subfamily, Fis Family  32.21 
 
 
502 aa  124  5e-27  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2533  two component, sigma54 specific, transcriptional regulator, Fis family  32.64 
 
 
483 aa  124  5e-27  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2997  putative PAS/PAC sensor protein  33.47 
 
 
629 aa  125  5e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.127618 
 
 
-
 
NC_013223  Dret_0447  putative sigma54 specific transcriptional regulator  29.93 
 
 
438 aa  124  6e-27  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2770  PAS sensor protein  33.47 
 
 
629 aa  124  6e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2053  Fis family transcriptional regulator  31.7 
 
 
664 aa  124  6e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_39360  putative sigma-54 dependent transcriptional regulator  33.08 
 
 
442 aa  124  6e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.718088 
 
 
-
 
NC_009483  Gura_4363  Fis family GAF modulated sigma54 specific transcriptional regulator  30.11 
 
 
653 aa  124  7e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  29.77 
 
 
456 aa  124  7e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_49020  sigma54-dependent transcriptional activator for the iron only nitrogenase, AnfA  31.32 
 
 
537 aa  124  7e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3082  sigma-54 dependent trancsriptional regulator  28.84 
 
 
482 aa  124  8e-27  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1552  Fis family transcriptional regulator  30.18 
 
 
525 aa  124  8e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.246478  n/a   
 
 
-
 
NC_012560  Avin_51000  Nif-specific sigma54-dependent transcriptional activator protein, NifA  31.06 
 
 
522 aa  124  8e-27  Azotobacter vinelandii DJ  Bacteria  normal  0.519777  n/a   
 
 
-
 
NC_011891  A2cp1_2629  two component, sigma54 specific, transcriptional regulator, Fis family  32.64 
 
 
483 aa  124  8e-27  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.14604  n/a   
 
 
-
 
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