| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2667 |
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| Symbol | |
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| ID | 4202205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 2940556 |
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| End bp | 2942562 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638083533 |
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| Product | sigma-54 dependent transcriptional regulator/sensory box protein |
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| Protein accession | YP_697047 |
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| Protein GI | 110798683 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1925] Phosphotransferase system, HPr-related proteins
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01003] Phosphotransferase System HPr (HPr) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTCAA GAGAATTGAT TATAAAGACG CCCTTAGGAT TACACACTAG ATACTCTGCT
ATGATTGTTA ATAAGGCTTC TGAAATAGAG TCTAAGTATA AAGTTAAACT CTATATAAAA
AAAGAATCCT ATACAGATTG GCTTGGAATA AGTATGCTTG CAATACTTTC TCTTAAGGTG
TTGCCTAATG AAAGTATATT AATTGGATCT AAAAATGAAG GAATGATTGA AAAGTTAGCT
GTTCAATCTC TTCTTGAGTT TATTGATAAA AACATAAATA ATCCCATTGA ATCTGAGGAT
AGTGAAATAG ATGAAATAAT AGATGCTAGC ATAGTAGCTA ATGAACAGGT TCTTGAAAGT
TTGCCAATAG GTATTGTTGT TATAGATATA GATCAAAATA TAATAACAAT TAATCAATAT
GCTTTAAGAT TTATTGGATG CAATAAAAAA GATGTTAAAG GAAAAAAGAT TAATGAAGTT
ATTCCATCAT CTCAGCTTCC TCATGTTATG CTTAGTAATT TAAAAAAGTA TGGCTCAACT
CTTCATATAA ATAACAGAGT TGGCTTAGTA AATAGCTCTC CTCTTTTCAT AAACGATAAG
ATTATAGGGG CTGTAAGTGT TATTCAAGAT GTATCTGATA TTATAGGTAT GAAAGAAATA
AATGAGAAAT TTACTAAGAT ACTTGAAAAT TCACAGGATA TGATTTGCTT TGTAGATGAA
AATGGTATAA TAAATTATTT AAATCCTGCA TATATTAAAA ACTTTTCTAA AGTTAGTTCT
GATGTTATAG GAAAAAGTAT TTTTGATATT GCTCCTAATG GACTTAGAGC TAAAGTATTT
AAAGAAAAAA CTTTATTAAA AGATGTAATT CATAAGAAAA ACGGTATAAA TGTTATAAGT
ACTATTGATC CTTTATTTAT TGATGGACAG TTTAAAGGAG TTATTTCTAC TTCTAGACCA
GTTAGTTTAA TTAAAGAACT TATGTCAAAA CTAAATAAAT CTGAACAGGA ATTAGATTAT
TATAAAAATG AGTTTTTAAG ACAGTTATCT AAAAATTCTT CTTTTAATAA TATTATAGGT
TCAACTAGAA CTCTAAAGGA TATAATGTAC ATGTGTCAAA AGGCTTCAGA AACCACATCA
ACTGTTCTTA TTCGTGGTGA AAGTGGTACA GGTAAGGAAC TTATTGCAAA GGCTATACAC
AATAATAGTA ATAGAAAAAA TAAGCCTTTC GTAAGGGTTA ACTGTGCTTC AATTCCTGAA
AATCTCTTAG AAAGTGAATT GTTCGGATAT GAAAAGGGAG CTTTTACTGG GGCAGTTCAA
AGCAAACCTG GTAAATTTGC TATTGCTGAT ACAGGTACTA TATTCTTAGA TGAAATAGGT
GATATGCCCT TATCAATGCA AGTTAAACTC CTTAGAGTTT TACAAGAAAG AGAGATTGAA
AGTGTTGGAG GAATAACTCC TAGAAATATT GATGTGAGGG TTATTGCTGC AACTAATAGA
AATTTAGAAG AAATGATTGA AGAGGGTTCC TTTAGAGAGG ATCTTTATTA CAGACTTAAT
GTCTTAGGTA TTAATCTTCC TCCACTTAGA GAACGTAAAG AAGATATTCC TGAACTAGCC
GAACATTTTA TAACTAAGCT AAATAAAAAG TTACATAAAA CTATATTAGG AATAAAACAA
GATGCCCTTA ATCTACTAAT TGAGTATTCT TGGCCTGGAA ATATACGTGA GCTTGAAAAT
ATAATGGAAA GGGCCATAAA TCTTTGTGAT GGAGATTATA TAGATAGTTC TTATCTGCCT
TCATATTTAA AGCCAGTTGA ATCAAAGTCT TTTAATTTAA ATATTGATAT TGATCATATA
CTTCCCTTTG AAGAATATGA AAAACAAATA ATAGAAGCAG CTATGAAGAA GTACAAATCC
TTTAATAAGG CAGGAAAAGC TTTAGGATTA ACTCATAGAA CAGTTTCTTT GAAATGTAAA
AAGTATAATA TAGATGTAAA AAAATAA
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| Protein sequence | MYSRELIIKT PLGLHTRYSA MIVNKASEIE SKYKVKLYIK KESYTDWLGI SMLAILSLKV
LPNESILIGS KNEGMIEKLA VQSLLEFIDK NINNPIESED SEIDEIIDAS IVANEQVLES
LPIGIVVIDI DQNIITINQY ALRFIGCNKK DVKGKKINEV IPSSQLPHVM LSNLKKYGST
LHINNRVGLV NSSPLFINDK IIGAVSVIQD VSDIIGMKEI NEKFTKILEN SQDMICFVDE
NGIINYLNPA YIKNFSKVSS DVIGKSIFDI APNGLRAKVF KEKTLLKDVI HKKNGINVIS
TIDPLFIDGQ FKGVISTSRP VSLIKELMSK LNKSEQELDY YKNEFLRQLS KNSSFNNIIG
STRTLKDIMY MCQKASETTS TVLIRGESGT GKELIAKAIH NNSNRKNKPF VRVNCASIPE
NLLESELFGY EKGAFTGAVQ SKPGKFAIAD TGTIFLDEIG DMPLSMQVKL LRVLQEREIE
SVGGITPRNI DVRVIAATNR NLEEMIEEGS FREDLYYRLN VLGINLPPLR ERKEDIPELA
EHFITKLNKK LHKTILGIKQ DALNLLIEYS WPGNIRELEN IMERAINLCD GDYIDSSYLP
SYLKPVESKS FNLNIDIDHI LPFEEYEKQI IEAAMKKYKS FNKAGKALGL THRTVSLKCK
KYNIDVKK
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