| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2402 |
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| Symbol | |
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| ID | 6410064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2590325 |
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| End bp | 2592250 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642712281 |
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| Product | transcriptional regulator, Fis family |
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| Protein accession | YP_001991391 |
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| Protein GI | 192290786 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTCT CGTCCCCCTC TTCTTTCACC GCCACGATCG ATGCGCCGCT GCGCGCCGCC
GTGTTCGACA GCGCAGTCGA AGCTGTACTG CTGGTCGACC CGACGCTCGA CCAGATCGTC
GACGCCAACA ACGCCGCCAG TGCCCTGCTC GGCCACGATC GCGACACTTT GCTGCAGACC
AGGTTCAGCG CGTTGCACAG CGCCCAGCTT CCTGCGCTCC TGGTGTTTAC CCAGGCGGTG
TTCGCCAAGG GTACCTATTG GACGCACGCG CTGACGCCGC TGCATGCCGA TGGCACGCAG
CTTCGATTGG AATACGCCGG CAAGCTTCTG CCGTATCGCG GTCGCTCGCT ATTGCTGTTG
ACGATGAGCG ATCTGGAGCA GCGCCGGCGA CGCTATGTCG ACGCCGTCGC CGACGATTAC
ATGCGCGACG GGTTGCCTGC ATGGCAGCGC GTCGAGCGGG TATTTCAGGA CATCGAACGC
GAGAACCAGC TGATTTTGCG GGCGGCTGGC GAAGGCATCT ACGGCGTCAA CGCCGAAGGA
AAGACCACCT TCGTTAATCC TGCCGCGGAG CGGATGCTGG GCTGGTCGGC CGAAGAGCTG
GTCGGCAAAG AGATGCATGC CATGGTGCAT CACAGCCATC ATGACGGCCG GCACTATCCC
GGCCAGCAGT GCCCAATCTA CGCGGCGTTT CGCGACGGCG CGGTGCACAC CGTCGACGGC
GAAGTGTTCT GGCACAAGGA CGGCACACCG GTCTGGGTCG AATACACCTC CACACCGATC
CACGACCGCA GCGGCGGCGT GGTCGGCGCC GTCGTGGTGT TTCGCGATGT CAGCCAGCGC
CACGAGGCCG ACGAAAAGCT GCACGCTGCG CTGGCCGAAG TCGACCGCCT GCGCGAGCGG
CTGCAGCTCG AAAACGACTA TCTGCAGGAA GAAATCCGGA TCGAGACCAA TCCGCGCGGC
ATCATCGGAC AGAGCGAAGC GATCCAGACC ACGCTGCGGC AGGTGAAGCT GGTGGCGCCG
ACCGCCGCGA CCGTGCTGAT CACCGGCGAA TCCGGCACCG GCAAGGAACT GATCGCGCGC
GCGATCCACG AAGCCAGTAC GCGCCGCGAC CGACCGCTGA TCAGGGTCAA CTGCGCCGCG
ATCCCGAGGG AGTTGTTCGA GAGCGAGTTC TTCGGTCACG CCCGCGGCGC CTTCACCGGT
GCGGTGCGCG ACCGCATCGG GCGGTTCGAG CTCGCTGACG GCGGCACGCT GTTCCTCGAC
GAGGTCGGGG AGATCCCGCT GGAGCTGCAG AGCAAACTGC TGCGCGTGCT GCAGGAGGGC
AATTTCGAGC GCGTCGGTGA GGAGCGCACC CGCAATGTCG ATGTCCGCCT GATCGCCGCC
ACCAACCGCG ACCTGAAGCG GGAGGTGCAG CGCGGCCATT TCCGCGAGGA CCTGTATTTC
CGACTCAGCG TATTTCCGAT CGAGTCGGTG CCGCTACGCG ATCGCCGCGA GGACATTCCG
CTGCTGGCGC AGCACTTCCT CGCCAATGAA GCACGCGAAC TGAAAACCGA GCTGCGGTTG
TCGCAGGGCG ATGTCCGTCG CCTGATGCGC TACGACTGGC CCGGCAATGT CCGCGAACTG
CAGAACGTGA TCGAGCGCGC CACCATCCTG GCGCAGAACG GACGGCTGCG GCTCGACCTG
CCGGAAACGG CCGGTAGTCA TGCCTCGGCC ACCAGCGGCC GTCAGAAGCC GGACGCCCGG
CCCGTGGTGA TGACCGTGGC TGATCTCCGC AACCTGGAGC GCGACAACAT CATCACGGCG
CTACGCGCCT GCAAAGGCAA GGTGTTCGGG GACGACGGCG CGGCGGCGAT GCTCGACATG
AAACCGACCA CGCTTGCGTC GCGGATCAAA GCGCTGGGCA TCACCTCGCC GCGCGCCCAG
GCGTGA
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| Protein sequence | MDLSSPSSFT ATIDAPLRAA VFDSAVEAVL LVDPTLDQIV DANNAASALL GHDRDTLLQT
RFSALHSAQL PALLVFTQAV FAKGTYWTHA LTPLHADGTQ LRLEYAGKLL PYRGRSLLLL
TMSDLEQRRR RYVDAVADDY MRDGLPAWQR VERVFQDIER ENQLILRAAG EGIYGVNAEG
KTTFVNPAAE RMLGWSAEEL VGKEMHAMVH HSHHDGRHYP GQQCPIYAAF RDGAVHTVDG
EVFWHKDGTP VWVEYTSTPI HDRSGGVVGA VVVFRDVSQR HEADEKLHAA LAEVDRLRER
LQLENDYLQE EIRIETNPRG IIGQSEAIQT TLRQVKLVAP TAATVLITGE SGTGKELIAR
AIHEASTRRD RPLIRVNCAA IPRELFESEF FGHARGAFTG AVRDRIGRFE LADGGTLFLD
EVGEIPLELQ SKLLRVLQEG NFERVGEERT RNVDVRLIAA TNRDLKREVQ RGHFREDLYF
RLSVFPIESV PLRDRREDIP LLAQHFLANE ARELKTELRL SQGDVRRLMR YDWPGNVREL
QNVIERATIL AQNGRLRLDL PETAGSHASA TSGRQKPDAR PVVMTVADLR NLERDNIITA
LRACKGKVFG DDGAAAMLDM KPTTLASRIK ALGITSPRAQ A
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