Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2402 |
Symbol | |
ID | 6410064 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 2590325 |
End bp | 2592250 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642712281 |
Product | transcriptional regulator, Fis family |
Protein accession | YP_001991391 |
Protein GI | 192290786 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGACCTCT CGTCCCCCTC TTCTTTCACC GCCACGATCG ATGCGCCGCT GCGCGCCGCC GTGTTCGACA GCGCAGTCGA AGCTGTACTG CTGGTCGACC CGACGCTCGA CCAGATCGTC GACGCCAACA ACGCCGCCAG TGCCCTGCTC GGCCACGATC GCGACACTTT GCTGCAGACC AGGTTCAGCG CGTTGCACAG CGCCCAGCTT CCTGCGCTCC TGGTGTTTAC CCAGGCGGTG TTCGCCAAGG GTACCTATTG GACGCACGCG CTGACGCCGC TGCATGCCGA TGGCACGCAG CTTCGATTGG AATACGCCGG CAAGCTTCTG CCGTATCGCG GTCGCTCGCT ATTGCTGTTG ACGATGAGCG ATCTGGAGCA GCGCCGGCGA CGCTATGTCG ACGCCGTCGC CGACGATTAC ATGCGCGACG GGTTGCCTGC ATGGCAGCGC GTCGAGCGGG TATTTCAGGA CATCGAACGC GAGAACCAGC TGATTTTGCG GGCGGCTGGC GAAGGCATCT ACGGCGTCAA CGCCGAAGGA AAGACCACCT TCGTTAATCC TGCCGCGGAG CGGATGCTGG GCTGGTCGGC CGAAGAGCTG GTCGGCAAAG AGATGCATGC CATGGTGCAT CACAGCCATC ATGACGGCCG GCACTATCCC GGCCAGCAGT GCCCAATCTA CGCGGCGTTT CGCGACGGCG CGGTGCACAC CGTCGACGGC GAAGTGTTCT GGCACAAGGA CGGCACACCG GTCTGGGTCG AATACACCTC CACACCGATC CACGACCGCA GCGGCGGCGT GGTCGGCGCC GTCGTGGTGT TTCGCGATGT CAGCCAGCGC CACGAGGCCG ACGAAAAGCT GCACGCTGCG CTGGCCGAAG TCGACCGCCT GCGCGAGCGG CTGCAGCTCG AAAACGACTA TCTGCAGGAA GAAATCCGGA TCGAGACCAA TCCGCGCGGC ATCATCGGAC AGAGCGAAGC GATCCAGACC ACGCTGCGGC AGGTGAAGCT GGTGGCGCCG ACCGCCGCGA CCGTGCTGAT CACCGGCGAA TCCGGCACCG GCAAGGAACT GATCGCGCGC GCGATCCACG AAGCCAGTAC GCGCCGCGAC CGACCGCTGA TCAGGGTCAA CTGCGCCGCG ATCCCGAGGG AGTTGTTCGA GAGCGAGTTC TTCGGTCACG CCCGCGGCGC CTTCACCGGT GCGGTGCGCG ACCGCATCGG GCGGTTCGAG CTCGCTGACG GCGGCACGCT GTTCCTCGAC GAGGTCGGGG AGATCCCGCT GGAGCTGCAG AGCAAACTGC TGCGCGTGCT GCAGGAGGGC AATTTCGAGC GCGTCGGTGA GGAGCGCACC CGCAATGTCG ATGTCCGCCT GATCGCCGCC ACCAACCGCG ACCTGAAGCG GGAGGTGCAG CGCGGCCATT TCCGCGAGGA CCTGTATTTC CGACTCAGCG TATTTCCGAT CGAGTCGGTG CCGCTACGCG ATCGCCGCGA GGACATTCCG CTGCTGGCGC AGCACTTCCT CGCCAATGAA GCACGCGAAC TGAAAACCGA GCTGCGGTTG TCGCAGGGCG ATGTCCGTCG CCTGATGCGC TACGACTGGC CCGGCAATGT CCGCGAACTG CAGAACGTGA TCGAGCGCGC CACCATCCTG GCGCAGAACG GACGGCTGCG GCTCGACCTG CCGGAAACGG CCGGTAGTCA TGCCTCGGCC ACCAGCGGCC GTCAGAAGCC GGACGCCCGG CCCGTGGTGA TGACCGTGGC TGATCTCCGC AACCTGGAGC GCGACAACAT CATCACGGCG CTACGCGCCT GCAAAGGCAA GGTGTTCGGG GACGACGGCG CGGCGGCGAT GCTCGACATG AAACCGACCA CGCTTGCGTC GCGGATCAAA GCGCTGGGCA TCACCTCGCC GCGCGCCCAG GCGTGA
|
Protein sequence | MDLSSPSSFT ATIDAPLRAA VFDSAVEAVL LVDPTLDQIV DANNAASALL GHDRDTLLQT RFSALHSAQL PALLVFTQAV FAKGTYWTHA LTPLHADGTQ LRLEYAGKLL PYRGRSLLLL TMSDLEQRRR RYVDAVADDY MRDGLPAWQR VERVFQDIER ENQLILRAAG EGIYGVNAEG KTTFVNPAAE RMLGWSAEEL VGKEMHAMVH HSHHDGRHYP GQQCPIYAAF RDGAVHTVDG EVFWHKDGTP VWVEYTSTPI HDRSGGVVGA VVVFRDVSQR HEADEKLHAA LAEVDRLRER LQLENDYLQE EIRIETNPRG IIGQSEAIQT TLRQVKLVAP TAATVLITGE SGTGKELIAR AIHEASTRRD RPLIRVNCAA IPRELFESEF FGHARGAFTG AVRDRIGRFE LADGGTLFLD EVGEIPLELQ SKLLRVLQEG NFERVGEERT RNVDVRLIAA TNRDLKREVQ RGHFREDLYF RLSVFPIESV PLRDRREDIP LLAQHFLANE ARELKTELRL SQGDVRRLMR YDWPGNVREL QNVIERATIL AQNGRLRLDL PETAGSHASA TSGRQKPDAR PVVMTVADLR NLERDNIITA LRACKGKVFG DDGAAAMLDM KPTTLASRIK ALGITSPRAQ A
|
| |