| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_51000 |
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| Symbol | nifA |
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| ID | 7763948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | + |
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| Start bp | 5170162 |
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| End bp | 5171730 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643807928 |
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| Product | Nif-specific sigma54-dependent transcriptional activator protein, NifA |
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| Protein accession | YP_002802162 |
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| Protein GI | 226947089 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.519777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCAA CCATCCCTCA GCGCTCGGCC AAACAGAACC CGGTCGAACT CTATGACCTG
CAATTGCAGG CCCTGGCGAG CATCGCCCGC ACGCTCAGCC GCGAACAACA GATCGACGAA
CTGCTCGAAC AGGTCCTGGC CGTACTGCAC AATGACCTCG GCCTGCTGCA TGGCCTGGTG
ACCATTTCCG ACCCGGAACA CGGCGCCCTG CAGATCGGCG CCATCCACAC CGACTCGGAA
GCGGTGGCCC AGGCCTGCGA AGGCGTGCGC TACAGAAGCG GCGAAGGCGT GATCGGCAAC
GTGCTCAAGC ACGGCAACAG CGTGGTGCTC GGGCGCATCT CCGCCGACCC GCGCTTTCTC
GACCGCCTGG CGCTGTACGA CCTGGAAATG CCGTTCATCG CCGTGCCGAT CAAGAACCCC
GAGGGCAACA CCATCGGCGT GCTGGCGGCC CAGCCGGACT GCCGCGCCGA CGAGCACATG
CCCGCGCGCA CGCGCCTTCT GGAGATCGTC GCCAACCTGC TGGCGCAGAC CGTGCGCCTG
GTGGTGAACA TCGAGGACGG CCGCGAGGCG GCCGACGAGC GCGACGAACT GCGTCGCGAG
GTGCGCGGCA AGTACGGCTT CGAGAACATG GTGGTGGGCC ACACCCCCAC CATGCGCCGG
GTGTTCGATC AGATCCGCCG GGTCGCCAAG TGGAACAGCA CCGTACTGGT CCTCGGCGAG
TCCGGTACCG GCAAGGAACT GATCGCCAGC GCCATCCACT ACAACTCGCC GCGCGCGCAC
CGCCCCTTCG TGCGCCTGAA CTGCGCCGCG CTGCCGGAAA CCCTGCTCGA GTCCGAACTC
TTCGGCCACG AGAAGGGCGC CTTCACCGGC GCGGTGAAGC AGCGCAAGGG GCGTTTCGAG
CAGGCCGACG GCGGCACCCT GTTCCTCGAC GAGATCGGCG AGATCTCGCC GATGTTCCAG
GCCAAGCTGC TGCGCGTGCT GCAGGAAGGC GAGTTCGAGC GGGTCGGCGG CAACCAGACG
GTGCGGGTCA ACGTGCGCAT CGTCGCCGCC ACCAACCGCG ACCTGGAAAG CGAGGTGGAA
AAGGGCAAGT TCCGCGAGGA CCTCTACTAC CGCCTGAACG TCATGGCCAT CCGCATTCCG
CCGCTGCGCG AGCGTACCGC CGACATTCCC GAACTGGCGG AATTCCTGCT CGGCAAGATC
GGCCGCCAGC AGGGCCGCCC GCTGACCGTC ACCGACAGCG CCATCCGCCT GCTGATGAGC
CACCGCTGGC CGGGCAACGT GCGCGAACTG GAGAACTGCC TGGAGCGCTC GGCGATCATG
AGCGAGGACG GCACCATCAC CCGCGACGTG GTCTCGCTGA CCGGGGTCGA CAACGAGAGC
CCGCCGCTCG CCGCGCCGCT GCCCGAGGTC AACCTGGCCG ACGAGACCCT GGACGACCGC
GAACGGGTGA TCGCCGCCCT CGAACAGGCC GGCTGGGTGC AGGCCAAGGC CGCGCGGCTG
CTGGGCATGA CGCCGCGGCA GATCGCCTAC CGCATCCAGA CCCTCAACAT CCACATGCGC
AAGATCTGA
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| Protein sequence | MNATIPQRSA KQNPVELYDL QLQALASIAR TLSREQQIDE LLEQVLAVLH NDLGLLHGLV
TISDPEHGAL QIGAIHTDSE AVAQACEGVR YRSGEGVIGN VLKHGNSVVL GRISADPRFL
DRLALYDLEM PFIAVPIKNP EGNTIGVLAA QPDCRADEHM PARTRLLEIV ANLLAQTVRL
VVNIEDGREA ADERDELRRE VRGKYGFENM VVGHTPTMRR VFDQIRRVAK WNSTVLVLGE
SGTGKELIAS AIHYNSPRAH RPFVRLNCAA LPETLLESEL FGHEKGAFTG AVKQRKGRFE
QADGGTLFLD EIGEISPMFQ AKLLRVLQEG EFERVGGNQT VRVNVRIVAA TNRDLESEVE
KGKFREDLYY RLNVMAIRIP PLRERTADIP ELAEFLLGKI GRQQGRPLTV TDSAIRLLMS
HRWPGNVREL ENCLERSAIM SEDGTITRDV VSLTGVDNES PPLAAPLPEV NLADETLDDR
ERVIAALEQA GWVQAKAARL LGMTPRQIAY RIQTLNIHMR KI
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