Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1920 |
Symbol | |
ID | 6463196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 2012242 |
End bp | 2013873 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642728129 |
Product | transcriptional regulator, NifA subfamily, Fis Family |
Protein accession | YP_002018759 |
Protein GI | 194336965 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0127788 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCATCG CACAGGAACA GGATCATAGC ATCATCAGCC TGCTTGCTGA AGTCAGCAGG ACCATAACCC ATGAAAATGA TATCAATAAG GTATTGCGGC TTGTTCTTTT CATCATGTCT GAAAACATGA ACATGCTCAG GGGCATGATC ACCATTCTTA ACCGCGACAG CGGTGAAATT GTCATTAACG AATCATTTGG GCTTACGGAA AAAGAGAAGG AGAGAGGACG TTACCAGATC GGCGAAGGAG TTATCGGCCA TGTCGTTAAA ACCGGCAAAG CGGTCATTGT TCCCTCTATT GACAACGAAC CGCTCTTTCT CGACCGAACC CGATCTCGAA GCAAGGTAAA AAAAGAGAGT CTCTGTTTTA TCTGCATTCC CATCAAGGCG GGCACGGAAA TCATCGGTAC CCTGAGTGCA GACCGTCAAC TGGAACCCGG AGCGGCAGAC AAGCCCTCAA AAACAGGCAA AGGGGGAGAA CAGCGCACCG ATATGCTTCA GCACTATGTC GACCAGCTCT CCATTATCGC ATCCATGATT TCACAAGCTG TTCGTATAAA ACAACTTGCA CATGAAGAGA GCGAAAAAAA ATCTCTGCAA ACAACCATCC TGGAAAAACC TTCAAGACAG CTCTATCAAG AAGAAAAGGG AGATGATGAG AAAATTTCAG AGGCCGAACG CCCGGCAAAT ATTATCGGCA ACACAAAACC GATGATCTCG CTCTACAAAA TGATCGACAA GATCGCAAAA ACCAACGCAA CCACCCTTGT GCTCGGAGAG AGCGGCGTTG GAAAAGAGCT GGTGGCAGGT GCCATTCACT TTAAAAGCCA TCGAAACGAG AACCCATTCA TCAAGTTCAA CTGTGCAGCA TTGCCTGAAA GCATTGTTGA AAGCGAACTC TTCGGACATG AAAAAGGGGC TTTCACGGGA GCCTCGGCTA CCCGACAGGG GAGATTTGAA CTTGCCCATA CCGGCACCAT CTTTCTTGAT GAAGTGGGCG AACTCAGTCT TGCAGTGCAG GCAAAACTGC TCAGAATCAT ACAGGAAAAA GAGTTTGAGC GGGTAGGAGG ATCAAAAACC ATCAAGGTTG ATGTACGGGT CATTGCCGCA ACAAACCGCA ATCTTGAAGA GTTGATACGA GGCGGACTTT TCCGCGAAGA TCTCTATTAC CGGCTCAACA TTTTTCCCAT AACCGTTCCC CCGCTGCGCG AACGCAAAAC CGACATCTTG CTGCTGGCCG ACTATTTTGT CGAAAAATTC AATGCCGCTA ACCATAAAGG AATCAGGCGA ATTTCGACAA CATCGATCGA CATGCTGATG CGCTATCACT GGCCAGGTAA CGTCAGGGAA CTGCAGAACT GTATGGAACG GGCGGTCATC CTGAGCGAAG ATAACGTCAT TCACGGCTAT CATCTGCCGC CGACACTCCA GACTGCCGAA TCGAGCGGAA CGCCCTATAC CGGATCGCTG CAGCAGAAAC TTGATGCAAT AGAAAAAGAG ATGATCATGG AGGCACTCAA ACGCACACAG GGAAACATGT CTCGTGCGGC CGTGCAACTT GGCCTTTCAG ACCGAATCAT GGGGCTTCGC ATAAAAAAAT TCGATATCGA CTACCGCAAA TTTCGTCCCT GA
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Protein sequence | MLIAQEQDHS IISLLAEVSR TITHENDINK VLRLVLFIMS ENMNMLRGMI TILNRDSGEI VINESFGLTE KEKERGRYQI GEGVIGHVVK TGKAVIVPSI DNEPLFLDRT RSRSKVKKES LCFICIPIKA GTEIIGTLSA DRQLEPGAAD KPSKTGKGGE QRTDMLQHYV DQLSIIASMI SQAVRIKQLA HEESEKKSLQ TTILEKPSRQ LYQEEKGDDE KISEAERPAN IIGNTKPMIS LYKMIDKIAK TNATTLVLGE SGVGKELVAG AIHFKSHRNE NPFIKFNCAA LPESIVESEL FGHEKGAFTG ASATRQGRFE LAHTGTIFLD EVGELSLAVQ AKLLRIIQEK EFERVGGSKT IKVDVRVIAA TNRNLEELIR GGLFREDLYY RLNIFPITVP PLRERKTDIL LLADYFVEKF NAANHKGIRR ISTTSIDMLM RYHWPGNVRE LQNCMERAVI LSEDNVIHGY HLPPTLQTAE SSGTPYTGSL QQKLDAIEKE MIMEALKRTQ GNMSRAAVQL GLSDRIMGLR IKKFDIDYRK FRP
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