| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1785 |
|---|
| Symbol | |
|---|
| ID | 5694625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 2150224 |
|---|
| End bp | 2151747 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641264383 |
|---|
| Product | NifA subfamily transcriptional regulator |
|---|
| Protein accession | YP_001529666 |
|---|
| Protein GI | 158521796 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGAAC TGGAAAAAAT AACTCTATTT TACGAGATCA GCAACGCGCT TAACGAGCAC
CTGGACCTGG AGCGGTCCTT GTATAATGTG CTGGGCATTC TGGCCGACCA GATGGGCATG
GTGCGGGGCA ATATCGCCAT TTTAAACCTC ATGCGTGACG AAATCACCAT GGAAGTGGCC
CACGGCATCT CCAAGCAGGC CATGAAAAAG GCCACCTACA AGGTGGGGGA GGGGATTATC
GGCGAGGTGA TCAAGTCCGG CAAAGGGGTG GCCATCCCGA AGATCAGCGA AGAGCCCCGG
TTTTTAAACC GCACCGGTTC CCGGCAAAAG GGGATTGATG TGGAGATATC CTTTCTCTGC
GTGCCCATCA AAAAAGGCAA CCAGGTGATA GGCACCCTGA GCGTGGACAA ACCCTATGAT
GCTGACTACT CCCTGGCCGA CGGAAAGAAG ATGCTCTCTG TGGTGGCCAC CATGATCGCC
CGGCACGTGA TCAATCTGGA AAGCATCCGC GCGGAAAAGG AGCGTCTGGA AGATGAGAAC
AAGCGGCTTC AGGACGAGCT GGAGCGCAAG TACAGCTTCA CCAGCATCAT CGGCAACAGC
AACAAGATGC GGGAGGTGTT CCAGATGGTC TCCCGGGTCT GCCGCAGCAA TGCCACGGTG
ATCCTGCGGG GAGAGAGCGG CACCGGTAAG GAGTTGGTGG CCAACGCCAT CCATTACAAC
AGCGACCGGG CCGGCCGGCC GTTTGTCAAG GTCAACTGCG CGGCCATTCC GGAAAACCTG
ATTGAAAGTG AACTGTTTGG CCATGAAAAG GGGTCTTTTA CCGGCGCCAT TCGCCGCCAG
GAGGGAAAGT TTGAGCTGGC CGACAAAGGG ACCATCTTCT TAGACGAGAT CGGCTCCATG
AATATGGATG CCCAGGCCAA GCTGCTGCGG GTGCTTCAGG AAAAGGAGTT CGAGCGCATC
GGCGGCCATC AGGTGATCAA GGCCGATGTG CGGGTAATTG CCGCCACCAA CAAGAACCTG
GAGGCGGCGG TGGAAGCCGA TACCTTCAGG GAAGACCTCT ATTACCGGCT CTGCGTGTTC
CCCATCTACC TGCCGCCCCT GCGGGAGCGC AAAACCGACA TCTCCCTGCT GGCCGAGTTC
TTTTTAGAAA AGTATGCCAC GGAAAACAAC CGCAAGATCA AGCGGCTCTC CACCCCGGCC
ATTGACATGC TGATGCAGTA TCACTGGCCC GGCAATGTGC GGGAGCTGGA AAACTGCATG
GAGCGGGCCG TGCTGCTGTG CGAGGGGGAG GTGCTGCACA GCTACCACCT GCCGCCCACC
CTTCAGACCG GCGAACACTC CGGCACTCTG CCCAACCGGA CCCTGGAGGA GGCCGTGGCC
GCGGTGGAGC AGGATATGCT CATCGACGCG CTGAAGAACA CCCGGGGTAA CATCACCAAC
GCCGCGGAGA TGCTGGGCAC CACGGTGCGC AAATTTGCCT ACAAGGCCCA GCGGTACGGC
ATCGATTACC GGACCTACCG GTAG
|
|---|
| Protein sequence | MKELEKITLF YEISNALNEH LDLERSLYNV LGILADQMGM VRGNIAILNL MRDEITMEVA
HGISKQAMKK ATYKVGEGII GEVIKSGKGV AIPKISEEPR FLNRTGSRQK GIDVEISFLC
VPIKKGNQVI GTLSVDKPYD ADYSLADGKK MLSVVATMIA RHVINLESIR AEKERLEDEN
KRLQDELERK YSFTSIIGNS NKMREVFQMV SRVCRSNATV ILRGESGTGK ELVANAIHYN
SDRAGRPFVK VNCAAIPENL IESELFGHEK GSFTGAIRRQ EGKFELADKG TIFLDEIGSM
NMDAQAKLLR VLQEKEFERI GGHQVIKADV RVIAATNKNL EAAVEADTFR EDLYYRLCVF
PIYLPPLRER KTDISLLAEF FLEKYATENN RKIKRLSTPA IDMLMQYHWP GNVRELENCM
ERAVLLCEGE VLHSYHLPPT LQTGEHSGTL PNRTLEEAVA AVEQDMLIDA LKNTRGNITN
AAEMLGTTVR KFAYKAQRYG IDYRTYR
|
|---|
| |