Gene Dole_1785 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1785 
Symbol 
ID5694625 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp2150224 
End bp2151747 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content58% 
IMG OID641264383 
ProductNifA subfamily transcriptional regulator 
Protein accessionYP_001529666 
Protein GI158521796 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID[TIGR01817] Nif-specific regulatory protein 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAGAAC TGGAAAAAAT AACTCTATTT TACGAGATCA GCAACGCGCT TAACGAGCAC 
CTGGACCTGG AGCGGTCCTT GTATAATGTG CTGGGCATTC TGGCCGACCA GATGGGCATG
GTGCGGGGCA ATATCGCCAT TTTAAACCTC ATGCGTGACG AAATCACCAT GGAAGTGGCC
CACGGCATCT CCAAGCAGGC CATGAAAAAG GCCACCTACA AGGTGGGGGA GGGGATTATC
GGCGAGGTGA TCAAGTCCGG CAAAGGGGTG GCCATCCCGA AGATCAGCGA AGAGCCCCGG
TTTTTAAACC GCACCGGTTC CCGGCAAAAG GGGATTGATG TGGAGATATC CTTTCTCTGC
GTGCCCATCA AAAAAGGCAA CCAGGTGATA GGCACCCTGA GCGTGGACAA ACCCTATGAT
GCTGACTACT CCCTGGCCGA CGGAAAGAAG ATGCTCTCTG TGGTGGCCAC CATGATCGCC
CGGCACGTGA TCAATCTGGA AAGCATCCGC GCGGAAAAGG AGCGTCTGGA AGATGAGAAC
AAGCGGCTTC AGGACGAGCT GGAGCGCAAG TACAGCTTCA CCAGCATCAT CGGCAACAGC
AACAAGATGC GGGAGGTGTT CCAGATGGTC TCCCGGGTCT GCCGCAGCAA TGCCACGGTG
ATCCTGCGGG GAGAGAGCGG CACCGGTAAG GAGTTGGTGG CCAACGCCAT CCATTACAAC
AGCGACCGGG CCGGCCGGCC GTTTGTCAAG GTCAACTGCG CGGCCATTCC GGAAAACCTG
ATTGAAAGTG AACTGTTTGG CCATGAAAAG GGGTCTTTTA CCGGCGCCAT TCGCCGCCAG
GAGGGAAAGT TTGAGCTGGC CGACAAAGGG ACCATCTTCT TAGACGAGAT CGGCTCCATG
AATATGGATG CCCAGGCCAA GCTGCTGCGG GTGCTTCAGG AAAAGGAGTT CGAGCGCATC
GGCGGCCATC AGGTGATCAA GGCCGATGTG CGGGTAATTG CCGCCACCAA CAAGAACCTG
GAGGCGGCGG TGGAAGCCGA TACCTTCAGG GAAGACCTCT ATTACCGGCT CTGCGTGTTC
CCCATCTACC TGCCGCCCCT GCGGGAGCGC AAAACCGACA TCTCCCTGCT GGCCGAGTTC
TTTTTAGAAA AGTATGCCAC GGAAAACAAC CGCAAGATCA AGCGGCTCTC CACCCCGGCC
ATTGACATGC TGATGCAGTA TCACTGGCCC GGCAATGTGC GGGAGCTGGA AAACTGCATG
GAGCGGGCCG TGCTGCTGTG CGAGGGGGAG GTGCTGCACA GCTACCACCT GCCGCCCACC
CTTCAGACCG GCGAACACTC CGGCACTCTG CCCAACCGGA CCCTGGAGGA GGCCGTGGCC
GCGGTGGAGC AGGATATGCT CATCGACGCG CTGAAGAACA CCCGGGGTAA CATCACCAAC
GCCGCGGAGA TGCTGGGCAC CACGGTGCGC AAATTTGCCT ACAAGGCCCA GCGGTACGGC
ATCGATTACC GGACCTACCG GTAG
 
Protein sequence
MKELEKITLF YEISNALNEH LDLERSLYNV LGILADQMGM VRGNIAILNL MRDEITMEVA 
HGISKQAMKK ATYKVGEGII GEVIKSGKGV AIPKISEEPR FLNRTGSRQK GIDVEISFLC
VPIKKGNQVI GTLSVDKPYD ADYSLADGKK MLSVVATMIA RHVINLESIR AEKERLEDEN
KRLQDELERK YSFTSIIGNS NKMREVFQMV SRVCRSNATV ILRGESGTGK ELVANAIHYN
SDRAGRPFVK VNCAAIPENL IESELFGHEK GSFTGAIRRQ EGKFELADKG TIFLDEIGSM
NMDAQAKLLR VLQEKEFERI GGHQVIKADV RVIAATNKNL EAAVEADTFR EDLYYRLCVF
PIYLPPLRER KTDISLLAEF FLEKYATENN RKIKRLSTPA IDMLMQYHWP GNVRELENCM
ERAVLLCEGE VLHSYHLPPT LQTGEHSGTL PNRTLEEAVA AVEQDMLIDA LKNTRGNITN
AAEMLGTTVR KFAYKAQRYG IDYRTYR