| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0447 |
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| Symbol | |
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| ID | 8418252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 547927 |
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| End bp | 549243 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645037008 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_003197322 |
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| Protein GI | 258404580 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTTC CCGACAATTT GCCCTGCGAG GCCATCCTGG ACAGCATTGC CGACGGGGTG
TTCACCGTGG ACCTCGAATG GACGATCACC TCGTTCAACC GGGCCGCCAC TCAGATTACC
GGCATCGCCC GCCAGGATGC CGTGGGGCAA AAATGCTGGG AGGTCTTGCG GTCTTCGCTG
TGTGACGGCT CTTGTGCCCT GGAGACCTGC CTGCGGGATG CCACCTCCAT CAGCAACAAA
TCCATTTTTA TTATCCGCCC CGACGGGAGC AAAGTGCCCA TCTCCATCAG CGCGGCCCCA
TTGCACAACC ACCAGGGCGA ATGCATCGGC GGCGTGGAGA CCTTTCGGGA CCTGAGCGCC
ATCCAGGTCA TGCGCCAGGA GATGGAGCAA CGCTACACCT TTGAAGACAT CGTCGGCAAA
AGCGAAGCCC TGTCCAAGAT CTTCCGCATC TTGCCGCAGG TGGCCCAGAG TCCGTCCTCG
GTTCTGCTGA CCGGCGAATC GGGCACAGGC AAGGAATTGT TTGCCCGCGC CCTGCACAAC
CTCAGCCCGC GCCGACAGGG CCCTCTGGTT GTAGTCAACT GCGGCGCCCT TCCCGAGCAC
CTCCTGGAAT CCGAACTTTT CGGCTACAAG GCCGGTGCGT TCACCGACGC CAAAAAAGAC
AAACCCGGCC GATTCCAACT CGCCGATGGC GGGACCCTGT TTTTGGACGA GATCGGCGAT
CTGCCTCTGG CCCTGCAGGT CAAACTGTTG CGGGTGTTGC AGGAAAAACA GGTCGAACCC
CTCGGCGCTG TGGCTCCGGT GCCTACGGAC GTGCGGATCA TCGCCGCCAC CAACCGGGAC
CTGGAACACC TTGTTCGCGA AGGCCGGTTC CGCGAGGACC TCTTCTACCG TCTCAATGTC
GCCCAACTCC GACTGCCCCC ACTGCGCGAG CGGCAGGAAG ACATCCCCTT GTTGGCCAAC
CATTTCATAC GGCGCTTCAA CCTCCTGCAA GGTAAAGAGG TCCAGGGCAT TTCCGAGGAC
GCTCTGGCCA CCCTTATACG TCACGATTTT CCCGGCAACA TCAGGGAGTT GGAAAACATC
CTCGAATACA GTTTCATCCT GTGCTCTTCA GGATTCATCC AACTCGAGCA TTTGCCGGAA
AAATTCCATC CTCAGGAGGC AAGTTCCCCG AACACCAATG CCCCCATGAC CATGGAAGAG
GTCAAGGTCC AAGCCGCCCG GCAGGCCCTG GCCCGCAACC AGGGCAAAAA AATGGCCGCC
TGCCGCGAAC TCGATATCAG CAAGGATACC CTGCGCCGCC TTTTGCGCCA GGGGTAA
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| Protein sequence | MAFPDNLPCE AILDSIADGV FTVDLEWTIT SFNRAATQIT GIARQDAVGQ KCWEVLRSSL
CDGSCALETC LRDATSISNK SIFIIRPDGS KVPISISAAP LHNHQGECIG GVETFRDLSA
IQVMRQEMEQ RYTFEDIVGK SEALSKIFRI LPQVAQSPSS VLLTGESGTG KELFARALHN
LSPRRQGPLV VVNCGALPEH LLESELFGYK AGAFTDAKKD KPGRFQLADG GTLFLDEIGD
LPLALQVKLL RVLQEKQVEP LGAVAPVPTD VRIIAATNRD LEHLVREGRF REDLFYRLNV
AQLRLPPLRE RQEDIPLLAN HFIRRFNLLQ GKEVQGISED ALATLIRHDF PGNIRELENI
LEYSFILCSS GFIQLEHLPE KFHPQEASSP NTNAPMTMEE VKVQAARQAL ARNQGKKMAA
CRELDISKDT LRRLLRQG
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