More than 300 homologs were found in PanDaTox collection
for query gene Synpcc7942_1527 on replicon NC_007604
Organism: Synechococcus elongatus PCC 7942



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011884  Cyan7425_0745  cyclic nucleotide-binding protein  55.4 
 
 
837 aa  863    Cyanothece sp. PCC 7425  Bacteria  normal  0.274315  normal  0.0506496 
 
 
-
 
NC_007413  Ava_3536  cyclic nucleotide-binding domain-containing protein  54.53 
 
 
841 aa  895    Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1527  nitrogen assimilation regulatory protein  100 
 
 
838 aa  1690    Synechococcus elongatus PCC 7942  Bacteria  normal  decreased coverage  0.000360333 
 
 
-
 
NC_011729  PCC7424_3607  cyclic nucleotide-binding protein  52.3 
 
 
841 aa  872    Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.29767 
 
 
-
 
NC_008820  P9303_29251  4Fe-4S ferredoxin, iron-sulfur binding protein  42.59 
 
 
695 aa  493  9.999999999999999e-139  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007516  Syncc9605_2565  sigma-54 factor  42.46 
 
 
662 aa  446  1e-123  Synechococcus sp. CC9605  Bacteria  normal  0.289153  normal 
 
 
-
 
NC_011830  Dhaf_3170  cyclic nucleotide-binding protein  26.17 
 
 
785 aa  209  1e-52  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0158223  n/a   
 
 
-
 
NC_011146  Gbem_0432  cyclic nucleotide-binding protein  26.79 
 
 
860 aa  208  3e-52  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3539  cyclic nucleotide-binding protein  24.5 
 
 
857 aa  202  1.9999999999999998e-50  Geobacter lovleyi SZ  Bacteria  normal  0.0290793  n/a   
 
 
-
 
NC_014151  Cfla_3683  4Fe-4S ferredoxin iron-sulfur binding domain protein  30.73 
 
 
476 aa  183  1e-44  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3534  4Fe-4S ferredoxin iron-sulfur binding domain protein  29.91 
 
 
476 aa  172  3e-41  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.613283 
 
 
-
 
NC_011830  Dhaf_2488  4Fe-4S ferredoxin iron-sulfur binding domain protein  28.38 
 
 
462 aa  170  8e-41  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE2079  sigma-54 dependent transcriptional regulator, putative  33.49 
 
 
505 aa  110  1e-22  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3375  two-component response regulator CbrB  31.51 
 
 
472 aa  109  2e-22  Saccharophagus degradans 2-40  Bacteria  normal  0.0307811  normal  0.146362 
 
 
-
 
NC_012912  Dd1591_2797  putative sigma54 specific transcriptional regulator  31.38 
 
 
512 aa  108  5e-22  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  28.98 
 
 
458 aa  106  2e-21  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_009675  Anae109_0671  two component, sigma54 specific, Fis family transcriptional regulator  31.65 
 
 
457 aa  106  2e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.288415  normal 
 
 
-
 
NC_008009  Acid345_1778  two component, sigma54 specific, Fis family transcriptional regulator  29.64 
 
 
466 aa  104  6e-21  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.557659  normal 
 
 
-
 
NC_011059  Paes_1528  two component, sigma54 specific, transcriptional regulator, Fis family  30.87 
 
 
479 aa  104  7e-21  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.163365  normal  0.0518301 
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  31.2 
 
 
466 aa  103  9e-21  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_011901  Tgr7_1028  response regulator receiver protein  31.23 
 
 
439 aa  103  1e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.163891  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  27.66 
 
 
448 aa  103  1e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  27.84 
 
 
458 aa  103  1e-20  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5108  transcriptional regulator, NifA subfamily, Fis Family  29.06 
 
 
684 aa  103  1e-20  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3291  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  25.68 
 
 
470 aa  103  1e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00624459  n/a   
 
 
-
 
NC_013132  Cpin_3620  two component, sigma54 specific, transcriptional regulator, Fis family  31.18 
 
 
449 aa  103  2e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.351229  hitchhiker  0.00000838354 
 
 
-
 
NC_013223  Dret_0200  two component, sigma54 specific, transcriptional regulator, Fis family  32.55 
 
 
449 aa  103  2e-20  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0811  nitrogen regulation protein NtrX  29.08 
 
 
456 aa  102  2e-20  Geobacter sulfurreducens PCA  Bacteria  normal  0.686874  n/a   
 
 
-
 
NC_009665  Shew185_1407  sigma-54 dependent trancsriptional regulator  29.88 
 
 
456 aa  103  2e-20  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0339  sigma-54 dependent trancsriptional regulator  30.99 
 
 
459 aa  102  3e-20  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000000000360791  unclonable  4.1095600000000004e-23 
 
 
-
 
NC_012912  Dd1591_0424  Sigma 54 interacting domain protein  29.2 
 
 
533 aa  102  3e-20  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2937  sigma54 specific transcriptional regulator, Fis family  29.84 
 
 
457 aa  102  3e-20  Shewanella baltica OS223  Bacteria  normal  0.40399  normal 
 
 
-
 
NC_013422  Hneap_2100  two component, sigma54 specific, transcriptional regulator, Fis family  33.08 
 
 
466 aa  101  4e-20  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  28.63 
 
 
458 aa  102  4e-20  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  28.69 
 
 
463 aa  102  4e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_007760  Adeh_4240  two component, sigma54 specific, Fis family transcriptional regulator  29.58 
 
 
469 aa  101  5e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1613  Sigma 54 interacting domain protein  29.39 
 
 
532 aa  101  5e-20  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  27.8 
 
 
466 aa  101  6e-20  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_008009  Acid345_3269  two component, sigma54 specific, Fis family transcriptional regulator  32.21 
 
 
467 aa  101  6e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_009943  Dole_0516  two component, sigma54 specific, Fis family transcriptional regulator  29.21 
 
 
468 aa  101  7e-20  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000971097  n/a   
 
 
-
 
NC_013440  Hoch_4753  transcriptional regulator, NifA subfamily, Fis Family  29.23 
 
 
557 aa  101  7e-20  Haliangium ochraceum DSM 14365  Bacteria  normal  0.050677  normal 
 
 
-
 
NC_014148  Plim_3238  sigma-54 factor interaction domain-containing protein  30.35 
 
 
662 aa  100  8e-20  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0144494  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  33.19 
 
 
448 aa  100  8e-20  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  31.51 
 
 
462 aa  100  8e-20  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  30.04 
 
 
458 aa  100  9e-20  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1417  sigma-54 dependent trancsriptional regulator  30.04 
 
 
457 aa  100  1e-19  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1843  two component, sigma54 specific, transcriptional regulator, Fis family  30.19 
 
 
465 aa  100  1e-19  Thauera sp. MZ1T  Bacteria  normal  0.798265  n/a   
 
 
-
 
NC_013411  GYMC61_2756  PAS modulated sigma54 specific transcriptional regulator, Fis family  26.69 
 
 
462 aa  100  1e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_0870  putative PAS/PAC sensor protein  27.95 
 
 
469 aa  100  1e-19  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.252306 
 
 
-
 
NC_009997  Sbal195_1443  sigma-54 dependent trancsriptional regulator  30.04 
 
 
456 aa  100  1e-19  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1300  putative phytochrome sensor protein  30.24 
 
 
518 aa  100  1e-19  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1977  two component, sigma54 specific, Fis family transcriptional regulator  27.41 
 
 
447 aa  99.4  2e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1165  PAS modulated sigma54 specific transcriptional regulator, Fis family  32.92 
 
 
477 aa  99.8  2e-19  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.243116  hitchhiker  0.00329602 
 
 
-
 
NC_007644  Moth_1713  sigma-54 dependent trancsriptional regulator  31.8 
 
 
748 aa  99.8  2e-19  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00000552259  normal 
 
 
-
 
NC_013422  Hneap_1585  transcriptional regulator, NifA subfamily, Fis Family  27.72 
 
 
553 aa  99.8  2e-19  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  31.66 
 
 
474 aa  100  2e-19  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_008009  Acid345_0023  sigma-54 dependent trancsriptional regulator  29.08 
 
 
319 aa  99.8  2e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2674  sigma-54 dependent trancsriptional regulator  30.54 
 
 
469 aa  99.8  2e-19  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2742  sigma-54 dependent trancsriptional regulator  30.54 
 
 
469 aa  99.8  2e-19  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2849  sigma-54 dependent trancsriptional regulator  30.54 
 
 
469 aa  99.4  2e-19  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1451  cyclic nucleotide-binding protein  31.47 
 
 
516 aa  100  2e-19  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.47386  n/a   
 
 
-
 
NC_002947  PP_4696  putative two component, sigma54 specific, transcriptional regulator, Fis family  30.68 
 
 
480 aa  99.4  3e-19  Pseudomonas putida KT2440  Bacteria  normal  0.511164  decreased coverage  0.00000622606 
 
 
-
 
NC_011145  AnaeK_0660  two component, sigma54 specific, transcriptional regulator, Fis family  35.48 
 
 
460 aa  99  3e-19  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1319  sigma-54 dependent trancsriptional regulator  29.05 
 
 
457 aa  99.4  3e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4561  two component, sigma54 specific, Fis family transcriptional regulator  30.68 
 
 
480 aa  99.4  3e-19  Pseudomonas putida F1  Bacteria  normal  0.601271  hitchhiker  0.000975449 
 
 
-
 
NC_012918  GM21_2443  two component, sigma54 specific, transcriptional regulator, Fis family  26.13 
 
 
454 aa  99  3e-19  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010159  YpAngola_A2529  DNA-binding transcriptional regulator TyrR  28.41 
 
 
525 aa  99  4e-19  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_1332  two component, sigma54 specific, transcriptional regulator, Fis family  31.1 
 
 
439 aa  98.6  4e-19  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3245  Sigma 54 interacting domain protein  31.71 
 
 
512 aa  99  4e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2403  two component, sigma54 specific, Fis family transcriptional regulator  30.25 
 
 
467 aa  98.6  4e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.32958 
 
 
-
 
NC_009708  YpsIP31758_1794  DNA-binding transcriptional regulator TyrR  28.41 
 
 
525 aa  98.6  4e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1902  DNA-binding transcriptional regulator TyrR  28.41 
 
 
525 aa  98.6  4e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3199  Fis family transcriptional regulator  32.22 
 
 
520 aa  98.6  5e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1807  two component, sigma54 specific, transcriptional regulator, Fis family  26.13 
 
 
454 aa  98.6  5e-19  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0582  sigma-54 factor interaction domain-containing protein  30.71 
 
 
517 aa  98.2  5e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2152  DNA-binding transcriptional regulator TyrR  30.04 
 
 
514 aa  98.2  6e-19  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_1157  transcriptional regulator, NifA subfamily, Fis Family  28.73 
 
 
502 aa  98.2  6e-19  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  30.71 
 
 
461 aa  98.2  6e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0626  two component, sigma54 specific, Fis family transcriptional regulator  35.02 
 
 
460 aa  98.2  6e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0590  two component, sigma54 specific, transcriptional regulator, Fis family  28.46 
 
 
440 aa  97.8  7e-19  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1931  transcriptional regulator  29.73 
 
 
935 aa  97.8  7e-19  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1516  GAF modulated sigma54 specific transcriptional regulator, Fis family  31.25 
 
 
643 aa  97.8  7e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_1164  sigma-54 dependent trancsriptional regulator  33.63 
 
 
501 aa  97.8  7e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.245431  normal 
 
 
-
 
NC_010814  Glov_2290  two component, sigma54 specific, transcriptional regulator, Fis family  29.17 
 
 
456 aa  97.8  8e-19  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1656  sigma-54 activating ATPase  29.96 
 
 
386 aa  97.4  9e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0864275  normal 
 
 
-
 
NC_011891  A2cp1_0660  two component, sigma54 specific, transcriptional regulator, Fis family  35.02 
 
 
461 aa  97.4  1e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  28.7 
 
 
452 aa  97.4  1e-18  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  32.35 
 
 
455 aa  97.1  1e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  29.2 
 
 
454 aa  97.1  1e-18  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0283  two component, sigma54 specific, transcriptional regulator, Fis family  28.79 
 
 
456 aa  97.1  1e-18  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_42680  sigma54-dependent response regulator, CbrB  31.25 
 
 
466 aa  97.1  1e-18  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  28.8 
 
 
455 aa  97.1  1e-18  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_010501  PputW619_0737  two component, sigma54 specific, Fis family transcriptional regulator  30.68 
 
 
479 aa  97.4  1e-18  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000126889 
 
 
-
 
NC_007954  Sden_3709  sigma-54 factor, interaction region  29.54 
 
 
457 aa  97.1  1e-18  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2697  two component, sigma-54 specific, Fis family transcriptional regulator  29.15 
 
 
447 aa  97.1  1e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3997  sigma54 specific transcriptional regulator, Fis family protein  27.85 
 
 
455 aa  97.1  1e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3328  response regulator receiver protein  30.58 
 
 
352 aa  97.4  1e-18  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0764  transcriptional regulator NifA  30.99 
 
 
511 aa  96.3  2e-18  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0670  two component, sigma54 specific, Fis family transcriptional regulator  29.49 
 
 
464 aa  96.7  2e-18  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3062  two-component response regulator CbrB  29.48 
 
 
463 aa  96.3  2e-18  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
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