Gene YPK_1902 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1902 
Symbol 
ID6089173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp2107375 
End bp2108952 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content49% 
IMG OID641596973 
ProductDNA-binding transcriptional regulator TyrR 
Protein accessionYP_001720646 
Protein GI170024141 
COG category[E] Amino acid transport and metabolism
[K] Transcription 
COG ID[COG3283] Transcriptional regulator of aromatic amino acids metabolism 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCTTGG AAGTTTTTTG CGAAGACCGG CTCGGTCTCA CCAGAGAGTT GCTTGATCTC 
TTGGTATTAC GCAGCATTGA TTTACGGGGG ATCGAAATTG ATCCTATTGG TCGCATTTAC
CTGAATTTTT CCAGTCTGGA TTTCAGTATA TTCAGTGCAC TAATGATGGA GATTCGGCGT
ATTGATGGGG TAACAGATGT CCGTACTGTT TCCTTTATGC CATCAGAGCG CGAACACCGT
TCGTTGCGAG CGCTGCTGGA ATCTATGCCA GAACCGGTAT TCTCTATTGA TTTAAAAGGG
AACCTTGAGC TGTCTAACCC CGCAGCCCGG GCGCTATTCT CCCTCAGTGA AGAAAAAATT
CGCCATAAAA CGGCGGGCAG CCTGCTGGGT GGCTATAATT TTTCACGCTG GTTTGAAGGC
GGCGATACGG CCCCTCATAC TGAACGGGTA TTGATCAATA ATCAGGATTA CCTGATGGAG
ATTACACCGA TTAATCTCGA AGACGAAAAC CAGAAAAAAC AAACCGTTGG CGCGGTTGTG
ATGTTGAAAT CAACCGCACG CATGGGGCAG CAACTGCAAA CTTTATCGGT CAATGATGAT
ACCGAGTTTA GACAGATAGT GGCGGCCAGC ACGAAGATGC GCCAGGTTTT GGCTCAAGCC
CGAAAATTAG CCATGCTTGA TGCGCCGTTA TTGCTGGTGG GGGATACAGG GACCGGTAAA
GATCTGCTGG CTCGTGCCTG TCACTTGCGC AGTCCTCGGG GGAAAATGCC ATTTCTTGGT
CTGAATTGTG CTTCACTGCC AGATGAAGTG GTCGAGAGTG AATTATTCGG TTATGCGGCT
GGCGCGTACC CAAACGCTAT TGAAGGCAAA AAGGGCTTCT TCGAACAGGC AAATGGGGGT
TCGGTCCTAT TGGATGAAAT TGGTGAAATG TCACCTCGTA TGCAAATCAA ACTGTTGCGT
TTCCTTAATG ACGGAACATT CCGCCGTGTA GGCGAAGAAC ATGAAGTGCA TGTTGATGTG
CGTGTCATTT GCGCCACCCA AAAAAATCTG GTGGAGTTGG TGCAACGTGG GGAATTCCGT
GAAGACTTAT ATTATCGGCT GAATGTCCTG ACCATCACAT TACCGCCATT GCGTGAGCGT
CAGACCGATA TCATGCCATT GACTGAGTTG TTTGTAGCGC GATTCTCTGA TGAGCAAGGT
GTGCCGCGGC CAAAATTGTC ACCAGAGTTG GCCAGTTTCC TGACTCACTA CGGTTGGCCG
GGTAATGTGC GTCAGCTTAA AAATGCGATT TATCGTGCGC TCACTCAGTT GGAGGGGGCC
GAATTAAGGC CACAGGATAT CATCCTGCCG GAGTTTGAAA TTGAAGCCAC GTTGGGTGAT
GAAGTCCTTG ATGGTTCACT TGATGACATC AGTAAGCGGT TCGAACGTTC TGTGCTGACT
CGCCTTTATC GTAATTATCC CAGCACCCGT AAACTGGCTA AACGGCTAGG TGTTTCGCAT
ACTGCGATCG CCAATAAATT ACGGGAGTAT GGTTTAAGCA GTAAACGGCC CGCCAGTGAT
GAAAATGAAG AAGAATAA
 
Protein sequence
MRLEVFCEDR LGLTRELLDL LVLRSIDLRG IEIDPIGRIY LNFSSLDFSI FSALMMEIRR 
IDGVTDVRTV SFMPSEREHR SLRALLESMP EPVFSIDLKG NLELSNPAAR ALFSLSEEKI
RHKTAGSLLG GYNFSRWFEG GDTAPHTERV LINNQDYLME ITPINLEDEN QKKQTVGAVV
MLKSTARMGQ QLQTLSVNDD TEFRQIVAAS TKMRQVLAQA RKLAMLDAPL LLVGDTGTGK
DLLARACHLR SPRGKMPFLG LNCASLPDEV VESELFGYAA GAYPNAIEGK KGFFEQANGG
SVLLDEIGEM SPRMQIKLLR FLNDGTFRRV GEEHEVHVDV RVICATQKNL VELVQRGEFR
EDLYYRLNVL TITLPPLRER QTDIMPLTEL FVARFSDEQG VPRPKLSPEL ASFLTHYGWP
GNVRQLKNAI YRALTQLEGA ELRPQDIILP EFEIEATLGD EVLDGSLDDI SKRFERSVLT
RLYRNYPSTR KLAKRLGVSH TAIANKLREY GLSSKRPASD ENEEE