| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0339 |
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| Symbol | |
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| ID | 3738903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 378250 |
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| End bp | 379629 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637777612 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_383307 |
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| Protein GI | 78221560 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000000000360791 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 4.1095600000000004e-23 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGGGAGTG AAAAAGGAAC TATTGATCCC GCTGTGTACC GGGCGATTCT GGCAAGTATG
GGGGATGGAA TCGTCTTCCT GGATACGGAG GACTGTTTCG CCTACATCAA CGCGGCCGCA
GAGAAGATCC GCGGCATCCG GGCGGAAAAC TACCTGGGGC GCCATATCCT TTCCATCTTC
GGCACCCATT CCAACCATAC GTCCGAGCGG GTGCGCAAGC TGCTGGCCGC CCTCAGGAGC
GGCGTCCTCC CCTTTCATGT CCATATCATC GAGACGAGGG GGAGGGTTTT CGAGAACAGC
TATTACCCCA TCCGCGATAA GGGAGGCAAC TATCTCGGAA CCCTGATGAT GAGCCGCGAC
ATCACCGAGA AGGAGCGGCT CAAGGCGGAA AACCTCACCC TTCGCGAGCA GGTGCTGTCC
GAATTCGGCT GCTGCGACCT GGTGGGCTCC AGCGATGTCA TGCGCCCCAT CTTCCAGATC
ATCAATGCCG CCGCTGCCGT CGACTCCACC ATCCTGATCA CCGGCGAAAG CGGCACCGGC
AAGGAGCTGG TGGCCCGGGC CGTCCACCAG CACAGCGCGC GCAAGGATCT CCCCATGATC
AAGGTCAACT GCGCGGCCCT CCCCGATACC CTCCTGGAAT CGGAACTCTT CGGCCATGAA
AAGGGGGCGT TTACCGGTGC CATCAAGGAG CGCAAGGGGA AATTCGAGCA GGCCCACGGG
GGAACCATCT TCCTCGATGA GATCGCGGAG ATGCCCCTGG CGGCCCAGGC CAAACTGCTC
AGAGTGCTGC AGGAGAGGAC CGTGGAGCGC CTGGGGAGCA CCCGGGAGAT CAGGGTGGAC
GTGCGGATCA TCGCCGCCAC CAACCGCGAC CTGCGCCGGG AGGTGACGGC GGGACGGTTT
CGGGAAGACC TCTTCTATCG CCTCAACGTC ATCCCGATCC ATATCCCCCC CCTGCGGGAG
CGGACCGAGG ATATCCTCGC CCTGGCCCGG CAGTTCCTCA ACCGGTTCGC CGAGAAGATG
CACAAGCCGG TCATGGAAAT CGCCCCGGAG GCCCAGAAGG CCCTCCTGGA ATACAACTAT
CCGGGCAATG TCAGGGAACT GGAAAATGCT GTCGAGCGGG CCGTTGCCCT CTCCCTTGGC
AGCAATCTGC GCCTCGGAGA TCTCCCGTCG GAGTTCACCG CTCCGCACCC AGCCGGTGCT
CAGCCGCTTT CCCCGTCCGC CGGTCCCGCT TCCCTGGCCG ATAGTGTTCA TTCCATGGAA
AAAAACGCTA TCGAAGAGGC CTTGCGCTCC ACTGGCAACA AGAAGGGAGA TGCCGCTCGA
CTCCTCGGTA TCTCCCGGAA AACCTTGTGG GAAAAAATGA AACAGCTGGG GGTCACGTAG
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| Protein sequence | MGSEKGTIDP AVYRAILASM GDGIVFLDTE DCFAYINAAA EKIRGIRAEN YLGRHILSIF
GTHSNHTSER VRKLLAALRS GVLPFHVHII ETRGRVFENS YYPIRDKGGN YLGTLMMSRD
ITEKERLKAE NLTLREQVLS EFGCCDLVGS SDVMRPIFQI INAAAAVDST ILITGESGTG
KELVARAVHQ HSARKDLPMI KVNCAALPDT LLESELFGHE KGAFTGAIKE RKGKFEQAHG
GTIFLDEIAE MPLAAQAKLL RVLQERTVER LGSTREIRVD VRIIAATNRD LRREVTAGRF
REDLFYRLNV IPIHIPPLRE RTEDILALAR QFLNRFAEKM HKPVMEIAPE AQKALLEYNY
PGNVRELENA VERAVALSLG SNLRLGDLPS EFTAPHPAGA QPLSPSAGPA SLADSVHSME
KNAIEEALRS TGNKKGDAAR LLGISRKTLW EKMKQLGVT
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