Gene Plim_3238 details

Gene Information

• Locus tag: Plim_3238
• ID: 9139953
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 4181121
• End bp: 4183109
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 57%
• Product: sigma-54 factor interaction domain-containing protein
• Protein accession: YP_003631251
• Protein GI: 296123473

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0144494
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGCTG GCTGGTTGTC TCGAAATGAG TTTCGTCAGG CCGCTGAGTT CCCTGATCTG 
CCGGAATTCT CCGTGTGGCA GCAGGAGGTC TTTCAGTTAC TTCCCCGGGC GACGTCCATC 
GATGCATTCG GGCGGGAGGT CGCGGCACGA CTGGCTGGCC TGCTGGGGGT CAGCTATGTC 
GCCATCTGGC AAAGATCACC TGCCTGGGCC TCGATGGTTC AATACGGCCG ACTGGCCAAC 
GACGATCTGC CCCAGAGCCT GATGATCGAA GCACTCGACC GGGATGCAGC GACGATCGGT 
GTTAAAGCCA GTGGAAGCTG TCTCGTCGCC CCCTTGCCTC AGGAAGATGG GCTCTCTTCA 
TTGGGGACGG CTGTCCTTGT GATCCACGGT AAGAACCTGC ATGACAAGCA GTTGCCCTCC 
GCGATGTTCG CAGCTCAAAC GTTCGCGACA GCGCTGGCAG TGTGCCAGAA GACGATCAAG 
GCACAAGAGC GAGCCGAAAA GCTACGCGAG ATTCTCAAAC TGGCTGCACA ACTGGCCAAT 
GAGCAACAGA CAGAAAAACT TCTGACAAGA ATTGCCGAGG AAGCGACCCG CCTGCTCGAC 
TGTGATCGCG CCAGCATTTT CATCTGGGAT CGTGAACATC ACGAAGTGAT TGCCTGCCCT 
GCACTGGGTG TCGAAGGGGG CTCACTCCGA CTTTCTGACA AAGTGGGTGT CGTGGGAGAA 
GTCATTGCCA AGGTGCAGTT GATTCGCGTG GACGATGCCT ACGCCGACCC GCGATTTCAT 
CGCAAAGTCG ATGCTTCCAG TGGCTACAAG ACCAGCAATC TCCTCTGCGG CCCCTTACGC 
GATCTCGACG GCAAAGTTCT CGGTGCCTTT GAAGTTATTA ATCATCGCCA GGGCCCCTTT 
TCGCAGGAAG ATGAGATCAC ACTTCTCGAC CTGTGCATTC AGATTGCCGC TGCCCTGCAG 
AACACCAGAG AACGCGAACT GCTCGTGACA TCGAATCGTC AACTGACCGA GCAGGTCTCG 
CGTGGGGTCA ACATCGTTGG CGAAAGCCCG GCTATCGTCG CTATGCGGAG CACCATTCGC 
CGTCTCGCGG GAACCGATCT TCCTGTCCTG ATTCTCGGAG AAAGCGGCAC GGGGAAAGAA 
GTCGTGGCTT CCTCACTGCA TTACCAGGGA TCGCGGGCTG ACCGGCCGTT TATTGCTGTG 
AATTGTGCAG CTCTCACGGA AACACTTCTC GAAAGCGAAC TCTTCGGGCA TGAGCGTGGG 
TCGTTCACGG ATGCCCACGA AATGCGCCGC GGTAAGTTTG AACTCGCGGA AGGGGGAACC 
ATCTTTCTCG ATGAAATTGG TGATCTGAGT GCGGGTGGTC AGGCCAAACT CTTGCGTGTT 
CTGGAGCAGA AAGTGATCAC ACGCGTGGGT GGTTCGCAGA CGATTCCGAT TAATGCGCGT 
GTCATTGCCG CCACGAATGC CCGGTTGGCC GAAGCTGTGC GTGCAAAGAA GTTTCGCGAA 
GACCTCTACT TCCGCTTAAA TGTTGTCACA TTAGAAATCC CGCCGTTGCG TGAGCGAGCG 
GACGATGTTC TGCCTTTGGC CGAGTACTTT CTCGAACAGT TTGCGGTGCA GGCCCGCCGC 
GGGAAGATGC ATCTTTCGGC TGAAGCCAGG CGCCGCCTGC AATCGCATGC CTGGCCCGGC 
AACGTGCGTG AGCTGCGGAA TCTGATGGAA CGCGTGGCCT TTCTGGCACC GGCTGAGCGG 
ATTGAAGTCG AAGATCTGGC CTTCATTCTC AGCCCTGAGC GCGACAGTTT TCATGAGCCC 
TCGCTCGATA TGGGTCTCAG TGAGGCGACG AACTCCTTTC AGCAGGAATA CATCCGCCGG 
GCGATCAAGC GGGTGCGCAA CAACATGAGC GAAGCGGCGA GGCTATTAGG CCTGCACCGC 
TCGAATCTTT ACCGCAAAAT GCGGCAGCTC GATATGGCGG AAGCGGGGGA TGGGGAAGAG 
GAAGAGTAA 

 

Protein sequence

MAAGWLSRNE FRQAAEFPDL PEFSVWQQEV FQLLPRATSI DAFGREVAAR LAGLLGVSYV 
AIWQRSPAWA SMVQYGRLAN DDLPQSLMIE ALDRDAATIG VKASGSCLVA PLPQEDGLSS 
LGTAVLVIHG KNLHDKQLPS AMFAAQTFAT ALAVCQKTIK AQERAEKLRE ILKLAAQLAN 
EQQTEKLLTR IAEEATRLLD CDRASIFIWD REHHEVIACP ALGVEGGSLR LSDKVGVVGE 
VIAKVQLIRV DDAYADPRFH RKVDASSGYK TSNLLCGPLR DLDGKVLGAF EVINHRQGPF 
SQEDEITLLD LCIQIAAALQ NTRERELLVT SNRQLTEQVS RGVNIVGESP AIVAMRSTIR 
RLAGTDLPVL ILGESGTGKE VVASSLHYQG SRADRPFIAV NCAALTETLL ESELFGHERG 
SFTDAHEMRR GKFELAEGGT IFLDEIGDLS AGGQAKLLRV LEQKVITRVG GSQTIPINAR 
VIAATNARLA EAVRAKKFRE DLYFRLNVVT LEIPPLRERA DDVLPLAEYF LEQFAVQARR 
GKMHLSAEAR RRLQSHAWPG NVRELRNLME RVAFLAPAER IEVEDLAFIL SPERDSFHEP 
SLDMGLSEAT NSFQQEYIRR AIKRVRNNMS EAARLLGLHR SNLYRKMRQL DMAEAGDGEE 
EE