| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1164 |
|---|
| Symbol | |
|---|
| ID | 4460242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 1443951 |
|---|
| End bp | 1445456 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639701931 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_845292 |
|---|
| Protein GI | 116748605 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.245431 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAGTA GGCTCAATCC TTGCTTTTCC GCCATGGCGA AAACGGAAGG TTCGGCGAAT
AAGTGCCTCG ACTGTGAACT CGAAGACATC CTTGAGGCCT CCCACGACGG CCAGTTCATC
AGTGACGGCG AAGGCAACAT TGTCATGGTG AATTCGGCAT GGGAGCGGAT CTGCGGTATC
CATCGCGACT TTGTCGTCGG CAAGAACGCC CGCGATATGG TCGCCCAGAA GTTCTACACC
GAGTCTTCCG TCATCGCTGC GATCGAGGCG AGAAAGAAAA TCACGATCAT GCTCGAGATG
ACCCGTGGAG AGAAGATCGG GCAGAAAATC ATGGCCACCG CGATCCCCAT CTGGGGGGAG
GACGGCGAGA TCAAGCGTGT TGTTGCAAAT ATCCGGGATA TTACGGAAAT TCTCTATCTT
AAGGATCTTT TGGAGAAGAC CAAGCAGCTC AACGAGATTT ATGCCGCCGA GCTCGAACAG
ATGCGTTTTC AACAATTGAC CCGGAACTGC GACGTCATCG CCAGGAGCCC GGAGACGAGG
CGGGTCCTGG AGATGGCCGC ACAGGTCGCC AAGGTGGACT CCACGGTCCT GATCATCGGG
GAATCCGGCG CCGGCAAGGA AGTGATCGCC AATGCCATTC ACCGGCTCAG CCAGCGCAAC
GAAGGCCCGC TCATCAAGAT CAACTGCGGC GCCATTCCCG AAAACCTGCT TGAATCTGAA
CTCTTCGGCT ACGACTCGGG TGCGTTTACA GGGGCTCGAA AACAAGGCAA ACCGGGCATG
TTCGAACTGG CGGAAAAGGG GACGCTCTTT CTCGATGAGG TGGGCGATAT TACACTGAAT
TTACAGGTGA AGCTGCTGCG TGCCCTTCAG GATCATTCGA TCATGCGCGT GGGAGGCCTC
AAACCCGTCC CGGTCGATGC CCGCATCGTG GCGGCGACCA ACCGCAACTT GCGCGAAATG
GTCTCTTCCG GAGCCTTCCG CGAAGATCTC TACTACCGGC TGAACGTGGT CTCCATCGAG
ATCCCGCCCC TGCGGGAGCG CAAGGAAGAC ATCCCGCTGC TCGTCCAGTA TTTCCTGGAA
AGGATCAACA AACGCTATCA GTTCAACAAG CGCTTCTCCC CGGCGGTGGT GGACCAGTTT
CTCTCCTATT CCTGGCCGGG TAACATCCGC GAGCTCGAAA ACGTCATCGA ACGCATGCTC
GTGATGACCG AAGACGAGGA GCTTCACGTC CGCCACTTGC CCGCCTATAT CCGCAACCAG
GCGCTGCCCC TGGAAGGTGG GATGGTCGTT CCGGCAAACC TGCCGCTCCA CAAAGCCATC
GAACAGGTCG AAAAGCAGTT GATCGAACAG GCGCTCAAGA AATACGGAAG CACGCGCAAG
GCCGCTGCCG CTCTGAAGCT CAACCAGTCG ACGGTGGTGC GCAAGATCAA GCGCTACAAC
ATTGCGGTCT GCCTGGAAGG GGACAAGATG CAAACCTGCT TCGAAGACCC CAGACTGAAA
ATCTGA
|
|---|
| Protein sequence | MVSRLNPCFS AMAKTEGSAN KCLDCELEDI LEASHDGQFI SDGEGNIVMV NSAWERICGI
HRDFVVGKNA RDMVAQKFYT ESSVIAAIEA RKKITIMLEM TRGEKIGQKI MATAIPIWGE
DGEIKRVVAN IRDITEILYL KDLLEKTKQL NEIYAAELEQ MRFQQLTRNC DVIARSPETR
RVLEMAAQVA KVDSTVLIIG ESGAGKEVIA NAIHRLSQRN EGPLIKINCG AIPENLLESE
LFGYDSGAFT GARKQGKPGM FELAEKGTLF LDEVGDITLN LQVKLLRALQ DHSIMRVGGL
KPVPVDARIV AATNRNLREM VSSGAFREDL YYRLNVVSIE IPPLRERKED IPLLVQYFLE
RINKRYQFNK RFSPAVVDQF LSYSWPGNIR ELENVIERML VMTEDEELHV RHLPAYIRNQ
ALPLEGGMVV PANLPLHKAI EQVEKQLIEQ ALKKYGSTRK AAAALKLNQS TVVRKIKRYN
IAVCLEGDKM QTCFEDPRLK I
|
|---|
| |