| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2849 |
|---|
| Symbol | |
|---|
| ID | 4478724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3410403 |
|---|
| End bp | 3411812 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639727455 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_870482 |
|---|
| Protein GI | 117921290 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGAC CAACGCTTTT CTATCATCTA CAGGACTTCG AGACCGAGCA GGCATTAGTA
CAGCTCGAGG GCGCGCAGAC CTACAACAAG CTACGCAGTA CCGATGATTT ATCTTGGATT
AGTCAGCTGG AGGCCAATCG TATCGATGTG GCGATCATTG AGCTGCCCCG TCTAAGCCGT
GAAGATTACT TAGCCTTACT CGAGTCCAGC GCCATTGCGG ATGTGGAGTT TATTTTCCTC
TCCGATGGCC TACCGAATCC TCATCTCGAT AAACTCTTAT CCAAATACGC GGGCTACCAT
TTCCGTAAGC CCATCGATAT GTCGTTGCTG TGCGAAACCT TAGCGGATTT TGCCCAGCAT
TTGGTTGCCA ACACTTCGAC GCGCATTCGC CCCTTTGCCA GCGAATTAGA CCAATATGGT
CTGCTGGTGG GCTCCTCGTT ACCTATGCAC CGCTTGTATC GCACTATCCG CCGGGTGTCG
GCCGCCGAGA GCAATGTGTT GATTATCGGC GAGAGTGGCG CGGGTAAAGA ACTGGTCGCC
AATACCATTC ACTTAGCCAG CCCGCGGGTG AATAAGCCCT ATATTGCGAT TAACTGTGGC
GCCTTGAGCC CTGAATTGGT TGATAGTGAA CTCTTCGGCC ATGTAAAAGG CTCTTTCACT
GGCGCGAATC GCGATCATCA AGGGGTATTT GAGCAGGCCG AAGGCGGCAC CTTATTCCTC
GATGAAGTCA CCGAAATGCC CCTAGAGCAT CAAGTTAAGC TGTTAAGAGT GCTCGAAAAT
AATGAATATC GTCCCGTCGG CAGCCCTAAG GTGCTCAAGG CCAATGTGCG TATTGTGGCG
GCGACAAACC GCGATCCTTT AGTGGCGATT GAGCAAGGAC AACTGCGGGA GGATTTGTAC
TTTCGCTTAG CGCATTTCCC CATTCAAGTG CCGCCATTGC GGGAGCGTGG GGAAGATATT
GTCGGACTTG CGAAGCATTT TCTGGCCTAT CGCAATGCGG CGGAAAAACA GAGCAAAGTG
TTCTCGCCCT CAAGTTTAGA GGCGATTGCG GCTCACGCTT GGCCGGGGAA TGTGCGCGAG
TTAAAGCATG CTATCGAGCG CGCTTATATT CTGGCGGACC ATGAGATTAC CCCTGAGCAT
TTACAGCTTA CGCCCAGTTT GGATAAAGAG GCGGCTGCGG AGGAAAATGT CGTGATCCCC
CAAGGTATGC GCCTTGAGGA GCTGGAAAAA ATCGCCATTT ACCAAGCGCT TGAAACAAGT
CAGGGCAACA AGACCGACAC CGCCGAGCAG CTTGGGATCA GCGTTAAAAC CCTCTATAAC
AAGCTCAGTA AATATGAGCA GGAGTCAGAT GCTCAAACTG TTGTTGATGC CGTTAGCGAA
GATTCCGTTA GCAATAGCGT CGCCAAGTAG
|
|---|
| Protein sequence | MIRPTLFYHL QDFETEQALV QLEGAQTYNK LRSTDDLSWI SQLEANRIDV AIIELPRLSR
EDYLALLESS AIADVEFIFL SDGLPNPHLD KLLSKYAGYH FRKPIDMSLL CETLADFAQH
LVANTSTRIR PFASELDQYG LLVGSSLPMH RLYRTIRRVS AAESNVLIIG ESGAGKELVA
NTIHLASPRV NKPYIAINCG ALSPELVDSE LFGHVKGSFT GANRDHQGVF EQAEGGTLFL
DEVTEMPLEH QVKLLRVLEN NEYRPVGSPK VLKANVRIVA ATNRDPLVAI EQGQLREDLY
FRLAHFPIQV PPLRERGEDI VGLAKHFLAY RNAAEKQSKV FSPSSLEAIA AHAWPGNVRE
LKHAIERAYI LADHEITPEH LQLTPSLDKE AAAEENVVIP QGMRLEELEK IAIYQALETS
QGNKTDTAEQ LGISVKTLYN KLSKYEQESD AQTVVDAVSE DSVSNSVAK
|
|---|
| |