| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3709 |
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| Symbol | |
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| ID | 4020271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4449504 |
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| End bp | 4450877 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637957773 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_564705 |
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| Protein GI | 91795054 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCGTC CAACACTTTT TTATCACTTG CAAGACCCCA AAGCCGAACG AGCACTTATG
CGATCATCTG CTGCGGCTCA TTTTGATAAG ATAGCCAGCA TCCCCACTGA ATCTTGGTTA
AGCCAACTCG AAAACATACA GGTGGATGTT GCACTGATTT CGAACCCTCA ATTGAGTCAT
GAGGACTATT TAAATTTAGT CAATAGCGCC ATGATGTCAG ACAGAGAGTT TATTTTTTTC
ACCGATGGTC AACCTAATCC CTATCTAGAC AAGCTAATGT CAAAAGGGGC GGGATATCAT
TTTCGCCAAC CCCACGATAT GGCCCTGATT AACGACACGC TAGAAGATTT CGCTCAAAAT
TTGATCCACA CTAAATCTCA CGTTAATCAG TCCTTCTGCA GCGACCTCGA TCAATATGGG
CTACTCGTTG GCTCATCAAG AGCTATGCAT AAACTTTATC GCACCATACG CAAGGTGGCC
ACAGCCGAAA GTAATGTGTT AATAGTAGGG GAAAGTGGTG CAGGTAAAGA ATTGGTTGCC
AATACCATAC ACTTAGCCAG CAGTCGGTCG AATGAACCCT TTATTGCTAT CAACTGTGGT
GCCTTAAGCC CAGAGTTGGT GGACAGTGAA CTATTTGGCC ATATAAAGGG GGCTTTCACT
GGGGCGCATA GGGATCATCA AGGGGTATTT GAGCAGGCAC AAGGAGGAAC TCTATTCCTA
GATGAAGTCA CTGAAATGCC AATTGAGCAT CAAGTGAAAC TACTGAGAGT CATTGAGAAT
AACGAGTACA GACCCGTTGG CAGTACTAAT GTAAAACACT CTAATGTACG TATTCTATCG
GCGACTAACC GCGATCCTCT CGAGGCCATT AATAAAGGTC ACTTTCGTGA AGACTTGTAT
TTTAGACTCG CTCATTTCCC AATCCAAGTG CCACCTTTAC GGGACAGGGG TGATGACATA
ACGGCACTGG CACAACATTT TCTCGCCTAT CGCAATGTTA CAGAGAATCA ATGTAAGGCC
TTTAGCCCTG AGACCATAGC ACTGATCGCC AAGCAAACCT GGTCCGGTAA TGTCCGAGAG
CTTAAACATG CCGTTGAAAG AGCCTATATC CTTGCGGATA ACGGTATTTA TCCCGAACAT
TTTAATTTCA GCCAAGATGA GTCATTGGCA GAAAGCAGTG ATGACGGGGT TATTCCCACA
GGTATGCGTT TAGATGAACT AGAAAAAAAG GCTATTTATC AAACATTAAT TAGCTTGCAA
GGTAACAAGA CTGATACTGC CAAGCAATTA GGTATAAGCG TCAAGACTCT CTATAACAAG
CTCACTAAAT ATGAAGATGA TATGAGCGAA AATGTACCAC CAAAAGATAC ATAA
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| Protein sequence | MARPTLFYHL QDPKAERALM RSSAAAHFDK IASIPTESWL SQLENIQVDV ALISNPQLSH
EDYLNLVNSA MMSDREFIFF TDGQPNPYLD KLMSKGAGYH FRQPHDMALI NDTLEDFAQN
LIHTKSHVNQ SFCSDLDQYG LLVGSSRAMH KLYRTIRKVA TAESNVLIVG ESGAGKELVA
NTIHLASSRS NEPFIAINCG ALSPELVDSE LFGHIKGAFT GAHRDHQGVF EQAQGGTLFL
DEVTEMPIEH QVKLLRVIEN NEYRPVGSTN VKHSNVRILS ATNRDPLEAI NKGHFREDLY
FRLAHFPIQV PPLRDRGDDI TALAQHFLAY RNVTENQCKA FSPETIALIA KQTWSGNVRE
LKHAVERAYI LADNGIYPEH FNFSQDESLA ESSDDGVIPT GMRLDELEKK AIYQTLISLQ
GNKTDTAKQL GISVKTLYNK LTKYEDDMSE NVPPKDT
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