Gene Dole_0516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0516 
Symbol 
ID5693338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp581241 
End bp582647 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content58% 
IMG OID641263100 
Producttwo component, sigma54 specific, Fis family transcriptional regulator 
Protein accessionYP_001528403 
Protein GI158520533 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000971097 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGGCG CCAAGGCCAA CATACTGGTG GTGGACGATG AACTGAGCAT GCGGGAGCTT 
CTGGATGTGA TGCTTTCCCG TGAGGGATAC AAGGTGGCCT GCGCCGAGGA CGGCACCCAG
GCCCTTTCCA TGCTGGGGGA GATGAAATTC GATCTGGTGC TGTGTGATGT GCGGCTGGGC
GACATGTCGG GCATTGATGT GCTCAAAGCG GCCAAAAAGG CCAATCACGA CACCGTTGTG
ATCATGATCT CCGCCTATGC CACCACCGAG GTGGCGGTGG CGGCCATGAA TGAGGGGGCC
TATGACTTTG TGCCCAAGCC CCTGGACAGT GCCGAGCTGA AGCAGACCAT TATCCGTTCC
CTGTCCCTGC GCACAGTGGA GCAGGAGCGC CAGGCCCTGG ACAACAGCCT GGAGGACCAC
CTCTATTTCG AACGCATTGT CGGCAGCCAT CCCAAGATGA AGCATATCTA CAACATGGTC
CGGCAGGTGG CCCAGACCAG GACCCGGATT CTGATCACCG GAGAGAGCGG CACCGGAAAA
GAGCTGATCG CCCGGGCCAT TCACGAGCAG AGCGACAGGG CGAACCACCC CTTTGTGGTG
GTCAACTGCG GCGGTATTCC GGAAAACCTG ATGGAGAGCG AGCTGTTCGG TCACAGGAAA
GGATCGTTTA CCGGTGCTGT CATGGACAAG AAGGGGCTTT TCACCATTGC GCACAAGGGC
ACCATCTTTC TTGACGAAAT CGGCGAGCTG AGCATGCCCC TGCAGGTCAA GCTGCTGCGG
GTGGTCCAGG ACGGGGCCTT CAAACAGGTG GGGGGAACAG AAGAGATATC CGTGGATGCC
AGAATTCTTT CGGCCACCAA CAAAAATCTC TCCCAGGAGG TGATTGACGG CAATTTCCGG
GAGGACCTGT TTTACCGGCT CAATGTGATT GAGTTGAACG TGCCCCCCCT TCGTGAGCGC
AAGAGCGATA TTCGGGTGCT GGCCCAGTTT TTTGTGGAAA AATTTTCAAA AGACCTGGGC
AAGGAGGTGA TTAAGCTCTC CTCCTATGCC CTGGACATGC TGGAAAAATA CAGTTTTCCC
GGCAATGTGC GGGAGCTTGA GAACCTGATA GAACGCAGCG TGGCCCTTTC CACCACCAAT
ATCATTCTGC CGGAAAGCCT CTCCCTGGCC GTGCACAAGC GGCGCTGGAT CGAGGGGGTG
CCGGGCCGGC GGTTCGACCT GGAGGAGGTG ACCAAGGGGG TGGCGCTGGA TGAGATTCTG
GCTGACATTG AGCGGGCCTA TCTTAAAAAG GCCCTGGAGA GCAGCGGGGG CAACAAGAAC
CGGGCTGCCG AACTGCTGGG CATCAGCTTT CGCTCTTTTC GGTACCGGTT GGACAAGCTG
AATGTGCCGT GGGACGAAGA AGAATAG
 
Protein sequence
MAGAKANILV VDDELSMREL LDVMLSREGY KVACAEDGTQ ALSMLGEMKF DLVLCDVRLG 
DMSGIDVLKA AKKANHDTVV IMISAYATTE VAVAAMNEGA YDFVPKPLDS AELKQTIIRS
LSLRTVEQER QALDNSLEDH LYFERIVGSH PKMKHIYNMV RQVAQTRTRI LITGESGTGK
ELIARAIHEQ SDRANHPFVV VNCGGIPENL MESELFGHRK GSFTGAVMDK KGLFTIAHKG
TIFLDEIGEL SMPLQVKLLR VVQDGAFKQV GGTEEISVDA RILSATNKNL SQEVIDGNFR
EDLFYRLNVI ELNVPPLRER KSDIRVLAQF FVEKFSKDLG KEVIKLSSYA LDMLEKYSFP
GNVRELENLI ERSVALSTTN IILPESLSLA VHKRRWIEGV PGRRFDLEEV TKGVALDEIL
ADIERAYLKK ALESSGGNKN RAAELLGISF RSFRYRLDKL NVPWDEEE