More than 300 homologs were found in PanDaTox collection
for query gene Caci_3452 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_3452  transcriptional regulator, LuxR family  100 
 
 
227 aa  453  1.0000000000000001e-126  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.983736  hitchhiker  0.00000787423 
 
 
-
 
NC_012791  Vapar_3060  two component transcriptional regulator, LuxR family  33.5 
 
 
215 aa  74.7  0.000000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3153  two component transcriptional regulator, LuxR family  33.94 
 
 
224 aa  71.6  0.000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.620598 
 
 
-
 
NC_008825  Mpe_A3043  LuxR family DNA binding response regulator  32.37 
 
 
209 aa  71.2  0.00000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  30.45 
 
 
223 aa  69.7  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  34.3 
 
 
222 aa  70.1  0.00000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_007614  Nmul_A0728  two component LuxR family transcriptional regulator  33.96 
 
 
217 aa  69.3  0.00000000004  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3579  two component LuxR family transcriptional regulator  31.55 
 
 
217 aa  69.7  0.00000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.393396  normal  0.0540104 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  42.24 
 
 
220 aa  69.3  0.00000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  34.38 
 
 
215 aa  68.6  0.00000000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  35.65 
 
 
236 aa  67  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.142587 
 
 
-
 
NC_008726  Mvan_2836  two component LuxR family transcriptional regulator  31.86 
 
 
207 aa  67.4  0.0000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.644859  normal 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  33.64 
 
 
236 aa  67  0.0000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  33.64 
 
 
236 aa  67  0.0000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  28.31 
 
 
222 aa  66.6  0.0000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  28.57 
 
 
222 aa  67  0.0000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  38.69 
 
 
225 aa  66.2  0.0000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_009901  Spea_1953  response regulator  28.37 
 
 
214 aa  65.5  0.0000000007  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00404481  n/a   
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  32 
 
 
220 aa  65.1  0.0000000009  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  31.9 
 
 
211 aa  65.1  0.0000000009  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  31.19 
 
 
225 aa  65.1  0.0000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  29.72 
 
 
226 aa  64.7  0.000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2225  two component transcriptional regulator, LuxR family  31.98 
 
 
209 aa  64.7  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_4250  two component LuxR family transcriptional regulator  35.53 
 
 
246 aa  63.5  0.000000002  Opitutus terrae PB90-1  Bacteria  normal  normal  0.59923 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  37.93 
 
 
218 aa  63.9  0.000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011205  SeD_A0598  transcriptional regulator FimZ  28.34 
 
 
210 aa  64.3  0.000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.110504 
 
 
-
 
NC_011149  SeAg_B0595  transcriptional regulator FimZ  28.34 
 
 
210 aa  64.3  0.000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.447967  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  29.86 
 
 
226 aa  63.9  0.000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  37.98 
 
 
215 aa  63.9  0.000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  37.93 
 
 
218 aa  63.9  0.000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  36.97 
 
 
216 aa  63.2  0.000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal 
 
 
-
 
NC_011080  SNSL254_A0602  transcriptional regulator FimZ  28.27 
 
 
210 aa  63.2  0.000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.379869  normal  0.0923244 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  37.07 
 
 
218 aa  63.2  0.000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  30.7 
 
 
228 aa  63.2  0.000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_011083  SeHA_C0659  transcriptional regulator FimZ  28.27 
 
 
210 aa  63.2  0.000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.611229  normal 
 
 
-
 
NC_011094  SeSA_A0594  transcriptional regulator FimZ  28.27 
 
 
210 aa  63.2  0.000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.627077  hitchhiker  0.00790766 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  28.92 
 
 
214 aa  62.8  0.000000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  29.28 
 
 
213 aa  62.8  0.000000004  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1090  two component transcriptional regulator, LuxR family  34.15 
 
 
224 aa  62.8  0.000000004  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.00274111  normal 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  39.29 
 
 
218 aa  62.8  0.000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  32.91 
 
 
214 aa  62.4  0.000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  28.84 
 
 
222 aa  62  0.000000006  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1122  two component transcriptional regulator, LuxR family  33.85 
 
 
234 aa  62  0.000000007  Rhodothermus marinus DSM 4252  Bacteria  normal  0.752968  n/a   
 
 
-
 
NC_009092  Shew_1824  response regulator  28.23 
 
 
229 aa  62  0.000000007  Shewanella loihica PV-4  Bacteria  normal  0.152948  normal 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  37.07 
 
 
220 aa  61.6  0.000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  35.37 
 
 
215 aa  61.6  0.000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_010159  YpAngola_A2113  LuxR family DNA-binding response regulator  32.05 
 
 
210 aa  61.6  0.00000001  Yersinia pestis Angola  Bacteria  normal  normal  0.616678 
 
 
-
 
NC_008463  PA14_12780  putative two-component response regulator  33.63 
 
 
209 aa  61.2  0.00000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000000436161  normal 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  34.94 
 
 
211 aa  61.2  0.00000001  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  36.92 
 
 
221 aa  61.2  0.00000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_1848  response regulator  29.02 
 
 
218 aa  61.2  0.00000001  Serratia proteamaculans 568  Bacteria  normal  0.0524957  normal 
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  32.5 
 
 
217 aa  61.6  0.00000001  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  43.97 
 
 
226 aa  61.2  0.00000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  31.33 
 
 
213 aa  60.8  0.00000002  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  31.16 
 
 
228 aa  60.8  0.00000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  35.07 
 
 
217 aa  60.8  0.00000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  37.97 
 
 
216 aa  60.8  0.00000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  37.07 
 
 
261 aa  60.5  0.00000002  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  31.34 
 
 
233 aa  60.8  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1160  putative two-component response regulator  33.63 
 
 
209 aa  60.5  0.00000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0122525  n/a   
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  38.26 
 
 
219 aa  60.5  0.00000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_009767  Rcas_0211  two component LuxR family transcriptional regulator  29.72 
 
 
227 aa  60.8  0.00000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.196171  normal  0.645513 
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  28.91 
 
 
218 aa  59.7  0.00000003  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.972408 
 
 
-
 
NC_010468  EcolC_1725  response regulator  27.46 
 
 
218 aa  59.7  0.00000003  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.000351159  normal 
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  28.89 
 
 
232 aa  59.7  0.00000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  38.74 
 
 
222 aa  60.1  0.00000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_014210  Ndas_3120  two component transcriptional regulator, LuxR family  38.84 
 
 
218 aa  60.1  0.00000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.954631  normal 
 
 
-
 
NC_014158  Tpau_1410  two component transcriptional regulator, LuxR family  34.3 
 
 
222 aa  59.3  0.00000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.46664  n/a   
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  39.83 
 
 
222 aa  59.7  0.00000004  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_24710  putative two-component response regulator  37.17 
 
 
207 aa  59.7  0.00000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2093  putative two-component response regulator  37.17 
 
 
207 aa  59.7  0.00000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1229  response regulator receiver protein  31.91 
 
 
212 aa  59.3  0.00000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.643884  hitchhiker  0.00799583 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  39.32 
 
 
221 aa  59.3  0.00000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  30.23 
 
 
228 aa  59.3  0.00000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  36.09 
 
 
228 aa  59.3  0.00000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  34.62 
 
 
218 aa  59.3  0.00000005  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_011365  Gdia_1908  two component transcriptional regulator, LuxR family  35.58 
 
 
201 aa  59.3  0.00000005  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.264232 
 
 
-
 
CP001637  EcDH1_1732  two component transcriptional regulator, LuxR family  27.46 
 
 
218 aa  58.9  0.00000006  Escherichia coli DH1  Bacteria  hitchhiker  0.00000000000321601  n/a   
 
 
-
 
NC_011149  SeAg_B1173  response regulator  27.4 
 
 
218 aa  58.9  0.00000006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.0000706228  n/a   
 
 
-
 
NC_011083  SeHA_C2162  response regulator  27.4 
 
 
218 aa  58.9  0.00000006  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.284818  hitchhiker  0.000000016111 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  30.92 
 
 
214 aa  58.9  0.00000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  33.93 
 
 
234 aa  58.9  0.00000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2147  response regulator  27.46 
 
 
218 aa  58.9  0.00000006  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000040455  n/a   
 
 
-
 
NC_011094  SeSA_A2103  response regulator  27.4 
 
 
218 aa  58.9  0.00000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0532421  hitchhiker  0.00988724 
 
 
-
 
NC_011353  ECH74115_2686  response regulator  27.46 
 
 
218 aa  58.9  0.00000006  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000000957663  normal  0.053055 
 
 
-
 
NC_011205  SeD_A1296  response regulator  27.4 
 
 
218 aa  58.9  0.00000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0547167  hitchhiker  0.00000564902 
 
 
-
 
NC_009831  Ssed_2455  response regulator  29.19 
 
 
214 aa  58.9  0.00000006  Shewanella sediminis HAW-EB3  Bacteria  normal  0.140183  normal  0.431169 
 
 
-
 
NC_009800  EcHS_A2012  response regulator  27.46 
 
 
218 aa  58.9  0.00000006  Escherichia coli HS  Bacteria  hitchhiker  0.000000000124814  n/a   
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  36.89 
 
 
223 aa  58.9  0.00000006  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  37.84 
 
 
220 aa  58.9  0.00000006  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_010658  SbBS512_E1041  response regulator  27.46 
 
 
218 aa  58.9  0.00000006  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000000644757  n/a   
 
 
-
 
NC_010498  EcSMS35_1269  response regulator  27.46 
 
 
218 aa  58.9  0.00000006  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000584326  hitchhiker  0.00198125 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  32.82 
 
 
241 aa  58.9  0.00000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_006368  lpp2699  transmission activator LetA  33.87 
 
 
219 aa  58.9  0.00000007  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  31.03 
 
 
206 aa  58.9  0.00000007  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  34.17 
 
 
218 aa  58.5  0.00000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_013093  Amir_7055  two component transcriptional regulator, LuxR family  33.55 
 
 
219 aa  58.5  0.00000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0691  two component LuxR family transcriptional regulator  27.92 
 
 
227 aa  58.5  0.00000007  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0394761 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  29.01 
 
 
215 aa  58.5  0.00000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2141  response regulator  28.04 
 
 
214 aa  58.5  0.00000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.126922  n/a   
 
 
-
 
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