| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1824 |
|---|
| Symbol | |
|---|
| ID | 4922603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2099222 |
|---|
| End bp | 2099911 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640163389 |
|---|
| Product | response regulator |
|---|
| Protein accession | YP_001093949 |
|---|
| Protein GI | 127512752 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.152948 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTCTA TGTGGGCCGA GTATGAGCTG AAGGGTAGAT TGAAGTTGAT TTCTGTATTT
TTAGTTGATG ACCATGAGTT AGTAAGAACA GGAATCCGCC GCATCCTAGA GGATGAGCGC
GGTATCAAGG TTGTCGGCGA AGCAGGGGAT GGCGAATCTG CCGTGCAGTG GTGCCGTAAT
AACGAGGCTG ACGTGATCCT GATGGACATG AATATGCCTG GCATTGGCGG ACTCGAGGCG
ACCCGTAAGA TCCTGCGTTA TCAGTCCCAT GCCAAGATCA TCGTCTTGAC CATACATACC
GAAGATCCTT TCCCGACTAA GGTGATGCAG GCAGGCGCCT CAGGTTATCT GACCAAGGGC
GCGACTCCAC CTGAGGTGAT ACAGGCTATC CGTCAGGTGG CGCATGGCCA GCGTTATCTG
TCGCCGGAGA TTGCCCAGCA GATGGCCCTG AGTCAGTTCA ACCAGTCGGA AGACAATCCG
TTTAAGTCCT TGTCTGAGCG CGAATTGCAG ATCATGATGA TGATCACCAA TGGCGAACGT
GTCAGTGACA TCTCTGAGCA GCTCAACCTG AGCCCCAAGA CGGTCAACAG CTATCGTTAT
CGCTTGTTTG CCAAGCTTGG GATCAGCGGC GATGTCGAGC TGACCCGATT GGCGATCCGC
TACAAGATGT TGGATACCGG CCAGTTCTAG
|
|---|
| Protein sequence | MPSMWAEYEL KGRLKLISVF LVDDHELVRT GIRRILEDER GIKVVGEAGD GESAVQWCRN
NEADVILMDM NMPGIGGLEA TRKILRYQSH AKIIVLTIHT EDPFPTKVMQ AGASGYLTKG
ATPPEVIQAI RQVAHGQRYL SPEIAQQMAL SQFNQSEDNP FKSLSERELQ IMMMITNGER
VSDISEQLNL SPKTVNSYRY RLFAKLGISG DVELTRLAIR YKMLDTGQF
|
|---|
| |