| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2141 |
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| Symbol | varA |
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| ID | 6989367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2296671 |
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| End bp | 2297315 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380427 |
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| Product | response regulator |
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| Protein accession | YP_002263511 |
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| Protein GI | 209695582 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.126922 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGATTAAAG TATTCCTTGT AGATGATCAT GAGCTGGTTC GCACAGGGAT TCGACGTATT
CTTGAAGACG TCCGTGGAAT TAAAGTAGTA GGGGAAGCTG ACAGCGGTGA AGATGCCGTT
AAATGGTGTC GAACAGAGCA GGCTGATATT GTTCTGATGG ATATGAACAT GCCTGGTATT
GGTGGCTTAG AAGCCACGAA AAAGATTTTA CGATTTAACC CAGATATGAA AGTTATAGTA
TTAACTATTC ATACTGAGAA TCCATTCCCA ACGAAGGTGA TGCAAGCGGG AGCTGCAGGC
TATCTAACCA AAGGTGCGGG ACCGGATGAA ATGGTGAATG CTATTCGTAT GGTACAAAGT
GGCCAGCGTT ACTTATCACC AGAAATTGCT CAACAAATGG CGTTAAGTCA ATTTACGCCT
GATTCTGAAA ATCCTTTTAA AGAACTTTCA GAGCGTGAGT TACAGATAAT GATCATGATT
ACTAAAGGCG AAAAAGTGAC GGATATTTCC GAACAACTTA ATTTAAGCCC TAAAACTGTG
AACAGTTATC GTTATCGATT ATTCAGTAAA TTAGACATTA GTGGAGATGT TGAATTAACG
CATTTAGCTA TTCGTCATGG CATATTAGAT GCTGAGACGC TGTAG
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| Protein sequence | MIKVFLVDDH ELVRTGIRRI LEDVRGIKVV GEADSGEDAV KWCRTEQADI VLMDMNMPGI
GGLEATKKIL RFNPDMKVIV LTIHTENPFP TKVMQAGAAG YLTKGAGPDE MVNAIRMVQS
GQRYLSPEIA QQMALSQFTP DSENPFKELS ERELQIMIMI TKGEKVTDIS EQLNLSPKTV
NSYRYRLFSK LDISGDVELT HLAIRHGILD AETL
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