More than 300 homologs were found in PanDaTox collection
for query gene BBta_6500 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_6500  ABC transporter permease  100 
 
 
264 aa  509  1e-143  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.537768  normal 
 
 
-
 
NC_012791  Vapar_0306  binding-protein-dependent transport systems inner membrane component  73.28 
 
 
264 aa  392  1e-108  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0887  binding-protein-dependent transport systems inner membrane component  73.28 
 
 
263 aa  392  1e-108  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3945  binding-protein-dependent transport systems inner membrane component  72.9 
 
 
264 aa  394  1e-108  Polaromonas sp. JS666  Bacteria  normal  0.334886  normal  0.870267 
 
 
-
 
NC_009668  Oant_4437  binding-protein-dependent transport systems inner membrane component  68.56 
 
 
264 aa  377  1e-103  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0756  binding-protein-dependent transport systems inner membrane component  72.14 
 
 
264 aa  376  1e-103  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.533361  normal 
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  69.47 
 
 
264 aa  369  1e-101  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  68.7 
 
 
264 aa  365  1e-100  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_007952  Bxe_B0748  polyamine/opine/phosphonate ABC transporter inner membrane protein  67.18 
 
 
264 aa  358  4e-98  Burkholderia xenovorans LB400  Bacteria  normal  0.467059  normal 
 
 
-
 
NC_010676  Bphyt_4429  binding-protein-dependent transport systems inner membrane component  67.56 
 
 
264 aa  358  6e-98  Burkholderia phytofirmans PsJN  Bacteria  normal  0.186422  normal  0.676109 
 
 
-
 
NC_008061  Bcen_4730  binding-protein-dependent transport systems inner membrane component  68.32 
 
 
264 aa  357  9.999999999999999e-98  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.293753  n/a   
 
 
-
 
NC_008543  Bcen2424_3633  binding-protein-dependent transport systems inner membrane component  68.32 
 
 
264 aa  357  9.999999999999999e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.332864 
 
 
-
 
NC_010086  Bmul_5060  binding-protein-dependent transport systems inner membrane component  67.94 
 
 
264 aa  356  2.9999999999999997e-97  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.183233 
 
 
-
 
NC_010552  BamMC406_3539  binding-protein-dependent transport systems inner membrane component  67.56 
 
 
264 aa  353  2e-96  Burkholderia ambifaria MC40-6  Bacteria  normal  0.447694  normal 
 
 
-
 
NC_008391  Bamb_5374  binding-protein-dependent transport systems inner membrane component  67.18 
 
 
264 aa  353  2e-96  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.628457 
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  66.79 
 
 
264 aa  350  1e-95  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_010322  PputGB1_3207  binding-protein-dependent transport systems inner membrane component  69.08 
 
 
264 aa  344  8.999999999999999e-94  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0203  binding-protein-dependent transport systems inner membrane component  56.49 
 
 
265 aa  315  5e-85  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.973641  normal  0.52762 
 
 
-
 
NC_009485  BBta_1834  ABC transporter, permease protein  56.44 
 
 
269 aa  309  2.9999999999999997e-83  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.632575 
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  58.71 
 
 
264 aa  305  7e-82  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_011982  Avi_8304  ABC transporter  51.91 
 
 
265 aa  283  3.0000000000000004e-75  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_007948  Bpro_4377  binding-protein-dependent transport systems inner membrane component  51.7 
 
 
265 aa  282  5.000000000000001e-75  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4417  binding-protein-dependent transport systems inner membrane component  50 
 
 
268 aa  263  2e-69  Polaromonas sp. JS666  Bacteria  normal  0.303148  normal 
 
 
-
 
NC_007952  Bxe_B2705  spermidine/putrescine ABC transporter inner membrane protein  50.19 
 
 
265 aa  261  8e-69  Burkholderia xenovorans LB400  Bacteria  normal  0.628706  normal 
 
 
-
 
NC_010681  Bphyt_1894  binding-protein-dependent transport systems inner membrane component  50.95 
 
 
265 aa  259  3e-68  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00977235  normal  0.387076 
 
 
-
 
NC_010676  Bphyt_6540  binding-protein-dependent transport systems inner membrane component  49.81 
 
 
270 aa  259  3e-68  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.199847 
 
 
-
 
NC_010625  Bphy_7052  binding-protein-dependent transport systems inner membrane component  51.71 
 
 
265 aa  248  8e-65  Burkholderia phymatum STM815  Bacteria  normal  normal  0.34418 
 
 
-
 
NC_010087  Bmul_6002  binding-protein-dependent transport systems inner membrane component  50.95 
 
 
265 aa  246  3e-64  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.176391  normal 
 
 
-
 
NC_009720  Xaut_2579  binding-protein-dependent transport systems inner membrane component  40.32 
 
 
277 aa  188  7e-47  Xanthobacter autotrophicus Py2  Bacteria  normal  0.715101  normal 
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  38.24 
 
 
263 aa  180  2e-44  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_010505  Mrad2831_3230  binding-protein-dependent transport systems inner membrane component  41.13 
 
 
272 aa  172  3.9999999999999995e-42  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3393  ABC opine/polyamine transporter, inner membrane subunit  37.02 
 
 
264 aa  168  7e-41  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.381224  n/a   
 
 
-
 
NC_009050  Rsph17029_3039  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
264 aa  168  7e-41  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal 
 
 
-
 
NC_008261  CPF_1479  ABC transporter, permease protein  32.03 
 
 
260 aa  168  1e-40  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0195961  n/a   
 
 
-
 
NC_008786  Veis_0786  binding-protein-dependent transport systems inner membrane component  38.93 
 
 
265 aa  164  1.0000000000000001e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_5050  binding-protein-dependent transport systems inner membrane component  38.37 
 
 
262 aa  160  1e-38  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1236  ABC spermidine/putrescine transporter, inner membrane subunit  36.59 
 
 
267 aa  159  3e-38  Burkholderia xenovorans LB400  Bacteria  normal  0.362839  normal 
 
 
-
 
NC_011982  Avi_8149  ABC transporter  36.75 
 
 
266 aa  155  7e-37  Agrobacterium vitis S4  Bacteria  normal  0.828592  n/a   
 
 
-
 
NC_009485  BBta_7195  ABC transporter permease  38.52 
 
 
271 aa  154  1e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  35.04 
 
 
282 aa  152  4e-36  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
282 aa  152  5.9999999999999996e-36  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  35.04 
 
 
282 aa  152  5.9999999999999996e-36  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2420  putative ABC spermidine/putrescine transporter permease protein  37.92 
 
 
281 aa  150  2e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.814446  normal 
 
 
-
 
NC_009720  Xaut_0865  binding-protein-dependent transport systems inner membrane component  35.09 
 
 
264 aa  147  1.0000000000000001e-34  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4000  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
275 aa  147  2.0000000000000003e-34  Pseudomonas mendocina ymp  Bacteria  normal  0.360042  normal 
 
 
-
 
NC_011004  Rpal_5130  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
596 aa  146  3e-34  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0569  binding-protein-dependent transport systems inner membrane component  37.07 
 
 
268 aa  146  3e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.0474626  normal 
 
 
-
 
NC_009050  Rsph17029_3639  binding-protein-dependent transport systems inner membrane component  35.89 
 
 
268 aa  146  4.0000000000000006e-34  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.344703 
 
 
-
 
NC_010511  M446_4679  binding-protein-dependent transport systems inner membrane component  36.22 
 
 
287 aa  146  4.0000000000000006e-34  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2228  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
272 aa  146  4.0000000000000006e-34  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2541  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
272 aa  145  7.0000000000000006e-34  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_014210  Ndas_1923  binding-protein-dependent transport systems inner membrane component  38.17 
 
 
262 aa  143  2e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.438917 
 
 
-
 
NC_008254  Meso_3746  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
268 aa  144  2e-33  Chelativorans sp. BNC1  Bacteria  normal  0.475602  n/a   
 
 
-
 
NC_010505  Mrad2831_1250  binding-protein-dependent transport systems inner membrane component  38.59 
 
 
272 aa  144  2e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0427  binding-protein-dependent transport systems inner membrane component  37.24 
 
 
274 aa  142  4e-33  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4602  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
591 aa  142  4e-33  Paracoccus denitrificans PD1222  Bacteria  normal  0.621124  normal 
 
 
-
 
NC_010511  M446_4045  binding-protein-dependent transport systems inner membrane component  37.66 
 
 
274 aa  142  5e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.329946  normal 
 
 
-
 
NC_007802  Jann_3236  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
262 aa  141  9.999999999999999e-33  Jannaschia sp. CCS1  Bacteria  normal  0.0387101  normal  0.554966 
 
 
-
 
NC_010627  Bphy_7801  binding-protein-dependent transport systems inner membrane component  37.34 
 
 
284 aa  141  9.999999999999999e-33  Burkholderia phymatum STM815  Bacteria  normal  0.109099  normal 
 
 
-
 
NC_007494  RSP_3518  ABC polyamine/opine transporter, inner membrane subunit  40.44 
 
 
261 aa  140  1.9999999999999998e-32  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.336262  n/a   
 
 
-
 
NC_009720  Xaut_0859  binding-protein-dependent transport systems inner membrane component  36.03 
 
 
268 aa  140  1.9999999999999998e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2347  Ornithine carbamoyltransferase  35.71 
 
 
288 aa  140  1.9999999999999998e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00485927 
 
 
-
 
NC_008148  Rxyl_2915  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
267 aa  140  3e-32  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3163  binding-protein-dependent transport systems inner membrane component  40.44 
 
 
261 aa  139  3.9999999999999997e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.610891  normal  0.0260594 
 
 
-
 
NC_010511  M446_3856  binding-protein-dependent transport systems inner membrane component  37.29 
 
 
270 aa  138  7.999999999999999e-32  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
269 aa  138  7.999999999999999e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_010622  Bphy_2380  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
279 aa  138  8.999999999999999e-32  Burkholderia phymatum STM815  Bacteria  normal  0.576146  normal 
 
 
-
 
NC_007492  Pfl01_3243  binding-protein dependent transport system inner membrane protein  33.2 
 
 
269 aa  137  1e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.796458 
 
 
-
 
NC_008786  Veis_4322  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
265 aa  137  1e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.102499  normal 
 
 
-
 
NC_009485  BBta_0498  putative sperimidine/putrescine ABC transporter (permease protein)  36.58 
 
 
265 aa  137  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.986757  normal  0.371454 
 
 
-
 
NC_010184  BcerKBAB4_1203  ornithine carbamoyltransferase  32.63 
 
 
266 aa  137  2e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4294  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
279 aa  137  2e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.144254  normal 
 
 
-
 
NC_011757  Mchl_4563  Ornithine carbamoyltransferase  38.43 
 
 
259 aa  136  3.0000000000000003e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.145972 
 
 
-
 
NC_010172  Mext_4192  ornithine carbamoyltransferase  38.43 
 
 
259 aa  136  3.0000000000000003e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.457573  normal 
 
 
-
 
NC_012912  Dd1591_1871  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
278 aa  136  3.0000000000000003e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3816  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
269 aa  135  5e-31  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0037178  normal  0.4746 
 
 
-
 
NC_012850  Rleg_3985  binding-protein-dependent transport systems inner membrane component  36.29 
 
 
279 aa  135  5e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0828593 
 
 
-
 
NC_010322  PputGB1_2089  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
268 aa  135  5e-31  Pseudomonas putida GB-1  Bacteria  normal  0.217099  normal 
 
 
-
 
NC_010501  PputW619_4788  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
275 aa  135  5e-31  Pseudomonas putida W619  Bacteria  normal  normal  0.776443 
 
 
-
 
NC_010681  Bphyt_2374  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
270 aa  135  6.0000000000000005e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1953  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
268 aa  135  6.0000000000000005e-31  Pseudomonas putida F1  Bacteria  normal  0.911704  normal 
 
 
-
 
NC_010501  PputW619_1933  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
269 aa  135  7.000000000000001e-31  Pseudomonas putida W619  Bacteria  normal  normal  0.0161656 
 
 
-
 
NC_008254  Meso_2370  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
274 aa  135  7.000000000000001e-31  Chelativorans sp. BNC1  Bacteria  normal  0.560014  n/a   
 
 
-
 
NC_012850  Rleg_1647  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
262 aa  135  9e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.29435 
 
 
-
 
NC_007492  Pfl01_5122  binding-protein dependent transport system inner membrane protein  34.68 
 
 
274 aa  134  9.999999999999999e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.026759  normal  0.638371 
 
 
-
 
NC_009485  BBta_3185  ABC transporter permease  36.29 
 
 
271 aa  134  1.9999999999999998e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_1400  spermidine/putrescine ABC transporter, permease protein  31.54 
 
 
266 aa  134  1.9999999999999998e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1201  spermidine/putrescine ABC transporter permease  31.54 
 
 
266 aa  134  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  0.440242  n/a   
 
 
-
 
NC_005957  BT9727_1179  spermidine/putrescine ABC transporter, permease  31.54 
 
 
266 aa  134  1.9999999999999998e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1181  spermidine/putrescine ABC transporter, permease  31.54 
 
 
266 aa  134  1.9999999999999998e-30  Bacillus cereus E33L  Bacteria  normal  0.0752832  n/a   
 
 
-
 
NC_007530  GBAA_1299  spermidine/putrescine ABC transporter permease  31.54 
 
 
266 aa  134  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2045  binding-protein dependent transport system inner membrane protein  34.08 
 
 
275 aa  133  1.9999999999999998e-30  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.586316  n/a   
 
 
-
 
NC_011981  Avi_7601  ABC transporter membrane spanning protein  33.7 
 
 
273 aa  134  1.9999999999999998e-30  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1377  spermidine/putrescine ABC transporter, permease protein  31.54 
 
 
266 aa  134  1.9999999999999998e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000768374 
 
 
-
 
NC_009523  RoseRS_1644  ornithine carbamoyltransferase  35.08 
 
 
285 aa  133  3e-30  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.574087 
 
 
-
 
NC_010322  PputGB1_0445  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
275 aa  133  3e-30  Pseudomonas putida GB-1  Bacteria  normal  normal  0.355956 
 
 
-
 
NC_008786  Veis_4689  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
276 aa  133  3e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.363302  normal 
 
 
-
 
NC_011892  Mnod_8490  binding-protein-dependent transport systems inner membrane component  39.33 
 
 
273 aa  133  3e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.668545  n/a   
 
 
-
 
NC_010511  M446_6381  ornithine carbamoyltransferase  37.3 
 
 
258 aa  133  3e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.970819 
 
 
-
 
NC_011982  Avi_8169  ABC transporter membrane spanning protein  38.1 
 
 
260 aa  133  3e-30  Agrobacterium vitis S4  Bacteria  normal  0.165008  n/a   
 
 
-
 
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