Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1221 |
Symbol | potB |
ID | 5385069 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1439567 |
End bp | 1440415 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640864199 |
Product | spermidine/putrescine ABC transporter, permease protein |
Protein accession | YP_001400202 |
Protein GI | 153948426 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 63 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGAAAC CACAAAAGGC ACTGAAACAA AAAGGGGCGT GGCTGCTTAG GGGGTGGAAA TGGGTATTTA ATTTTTACAG CGCCGCCATT TTATTATTCC TGATCGTACC GGTATTGGTC ATTGTGCCGC TGTCGTTTAA TGCGGGTTCT TTTCTCAGTT ACCCAATGGC GGGTTTTTCA CTGCGTTGGT ATCAGACCTT TTTCAACTCG GATGAGTGGC TGGGGGCCTT GGGCAACAGC CTGCTGATTG CCCCGTTGGC GACCTTGCTG GCGACGGGGC TGGGGGTTTT GGCCGCCATT GGCTTGGTGC GCGGGGAGTT TCGGGGCAAA GCGTTGGTGA TGGCGATGTT GATTTCGCCA ATGGTGGCCC CGGTGGTGAT CATTGCTGTT GGCATGTTTT TCTTCTTTGC CCGCTTATCA CTGCTCAACA GCTACCTGGG ATTAGTCTTG GCCCACGCCT TGCTTGGGGT CCCATTTGTC GTGATCACCG TGACCGCTGT CTTGAAAAGT TATGATCAGA ATCTGTCGCG GGCGGCCGCC AGCTTGGGGG CATCACAGTG GCGGGTCTTT CGTAAGGTCA CCTTACCGCT GATCGCCCCC GGTGTATTTT CAGGTGCCTT GTTTGCTTTT GCGGTTTCGT TTGATGAAGT GGTCGTGACA CTGTTTCTTG CCAGCCCGCG TCAGCGCACA TTACCGATCA AAATGTTCGC CGGTATCCGT GAAAATCTCG ATCCGACTAT TGCGGCGGCC GCTTCATTAA TGGTTGGCGC TTCGCTGTTG TTACTGATTG TGATGGAACT GCTCCGGCGG CGTAGTGAGC GTTTACGCCA TCATCTAATA TCCACATAA
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Protein sequence | MPKPQKALKQ KGAWLLRGWK WVFNFYSAAI LLFLIVPVLV IVPLSFNAGS FLSYPMAGFS LRWYQTFFNS DEWLGALGNS LLIAPLATLL ATGLGVLAAI GLVRGEFRGK ALVMAMLISP MVAPVVIIAV GMFFFFARLS LLNSYLGLVL AHALLGVPFV VITVTAVLKS YDQNLSRAAA SLGASQWRVF RKVTLPLIAP GVFSGALFAF AVSFDEVVVT LFLASPRQRT LPIKMFAGIR ENLDPTIAAA ASLMVGASLL LLIVMELLRR RSERLRHHLI ST
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