More than 300 homologs were found in PanDaTox collection
for query gene BBta_0498 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0498  putative sperimidine/putrescine ABC transporter (permease protein)  100 
 
 
265 aa  506  9.999999999999999e-143  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.986757  normal  0.371454 
 
 
-
 
NC_008786  Veis_4322  binding-protein-dependent transport systems inner membrane component  55.51 
 
 
265 aa  255  5e-67  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.102499  normal 
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  38.68 
 
 
264 aa  162  6e-39  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_007952  Bxe_B0748  polyamine/opine/phosphonate ABC transporter inner membrane protein  38.84 
 
 
264 aa  162  6e-39  Burkholderia xenovorans LB400  Bacteria  normal  0.467059  normal 
 
 
-
 
NC_010676  Bphyt_4429  binding-protein-dependent transport systems inner membrane component  38.84 
 
 
264 aa  162  6e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  0.186422  normal  0.676109 
 
 
-
 
NC_011982  Avi_8304  ABC transporter  36.21 
 
 
265 aa  160  2e-38  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_008688  Pden_5050  binding-protein-dependent transport systems inner membrane component  37.99 
 
 
262 aa  159  3e-38  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3539  binding-protein-dependent transport systems inner membrane component  37.86 
 
 
264 aa  156  3e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  0.447694  normal 
 
 
-
 
NC_008391  Bamb_5374  binding-protein-dependent transport systems inner membrane component  37.86 
 
 
264 aa  156  4e-37  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.628457 
 
 
-
 
NC_010086  Bmul_5060  binding-protein-dependent transport systems inner membrane component  37.86 
 
 
264 aa  155  6e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.183233 
 
 
-
 
NC_008061  Bcen_4730  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
264 aa  154  2e-36  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.293753  n/a   
 
 
-
 
NC_008261  CPF_1479  ABC transporter, permease protein  31.3 
 
 
260 aa  154  2e-36  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0195961  n/a   
 
 
-
 
NC_008543  Bcen2424_3633  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
264 aa  154  2e-36  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.332864 
 
 
-
 
NC_009668  Oant_4437  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
264 aa  152  4e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2420  putative ABC spermidine/putrescine transporter permease protein  35.51 
 
 
281 aa  150  2e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.814446  normal 
 
 
-
 
NC_012791  Vapar_0306  binding-protein-dependent transport systems inner membrane component  37.4 
 
 
264 aa  149  4e-35  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3945  binding-protein-dependent transport systems inner membrane component  37.6 
 
 
264 aa  148  7e-35  Polaromonas sp. JS666  Bacteria  normal  0.334886  normal  0.870267 
 
 
-
 
NC_007908  Rfer_0887  binding-protein-dependent transport systems inner membrane component  37.8 
 
 
263 aa  148  9e-35  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7195  ABC transporter permease  36.73 
 
 
271 aa  147  1.0000000000000001e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0203  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
265 aa  147  1.0000000000000001e-34  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.973641  normal  0.52762 
 
 
-
 
NC_007948  Bpro_4417  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
268 aa  147  2.0000000000000003e-34  Polaromonas sp. JS666  Bacteria  normal  0.303148  normal 
 
 
-
 
NC_010505  Mrad2831_1250  binding-protein-dependent transport systems inner membrane component  39.83 
 
 
272 aa  146  3e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  35.8 
 
 
264 aa  143  2e-33  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_009485  BBta_1834  ABC transporter, permease protein  33.74 
 
 
269 aa  144  2e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.632575 
 
 
-
 
NC_008254  Meso_3746  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
268 aa  144  2e-33  Chelativorans sp. BNC1  Bacteria  normal  0.475602  n/a   
 
 
-
 
NC_010511  M446_4045  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
274 aa  143  4e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.329946  normal 
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  34.16 
 
 
264 aa  142  5e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
263 aa  142  5e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  34.16 
 
 
264 aa  140  9.999999999999999e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_008786  Veis_0756  binding-protein-dependent transport systems inner membrane component  37.4 
 
 
264 aa  141  9.999999999999999e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.533361  normal 
 
 
-
 
NC_011662  Tmz1t_0427  binding-protein-dependent transport systems inner membrane component  37.4 
 
 
274 aa  140  3e-32  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3639  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
268 aa  139  4.999999999999999e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.344703 
 
 
-
 
NC_010676  Bphyt_6540  binding-protein-dependent transport systems inner membrane component  33.88 
 
 
270 aa  138  7.999999999999999e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.199847 
 
 
-
 
NC_008528  OEOE_1465  spermidine/putrescine ABC transporter permease protein  30.38 
 
 
262 aa  138  8.999999999999999e-32  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3207  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
264 aa  137  1e-31  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2705  spermidine/putrescine ABC transporter inner membrane protein  32.64 
 
 
265 aa  138  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.628706  normal 
 
 
-
 
NC_009620  Smed_4607  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
259 aa  137  2e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3039  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
264 aa  136  4e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal 
 
 
-
 
NC_007494  RSP_3393  ABC opine/polyamine transporter, inner membrane subunit  37.5 
 
 
264 aa  136  4e-31  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.381224  n/a   
 
 
-
 
NC_007802  Jann_3236  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
262 aa  135  5e-31  Jannaschia sp. CCS1  Bacteria  normal  0.0387101  normal  0.554966 
 
 
-
 
NC_013421  Pecwa_2541  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
272 aa  134  9.999999999999999e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_012917  PC1_2228  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
272 aa  134  1.9999999999999998e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1894  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
265 aa  132  6e-30  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00977235  normal  0.387076 
 
 
-
 
NC_012853  Rleg_5506  binding-protein-dependent transport systems inner membrane component  33.06 
 
 
267 aa  131  9e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.673957  normal  0.0589597 
 
 
-
 
NC_009485  BBta_6500  ABC transporter permease  37.6 
 
 
264 aa  131  1.0000000000000001e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.537768  normal 
 
 
-
 
NC_009439  Pmen_4000  binding-protein-dependent transport systems inner membrane component  36.89 
 
 
275 aa  130  3e-29  Pseudomonas mendocina ymp  Bacteria  normal  0.360042  normal 
 
 
-
 
NC_012850  Rleg_3985  binding-protein-dependent transport systems inner membrane component  35.97 
 
 
279 aa  128  1.0000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0828593 
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  34.36 
 
 
282 aa  127  1.0000000000000001e-28  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C1236  ABC spermidine/putrescine transporter, inner membrane subunit  31.17 
 
 
267 aa  128  1.0000000000000001e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.362839  normal 
 
 
-
 
NC_009720  Xaut_0859  binding-protein-dependent transport systems inner membrane component  35.22 
 
 
268 aa  127  1.0000000000000001e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1647  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
262 aa  128  1.0000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.29435 
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  34.36 
 
 
282 aa  127  2.0000000000000002e-28  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
282 aa  127  2.0000000000000002e-28  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3161  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
259 aa  125  5e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4377  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
265 aa  125  5e-28  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2045  binding-protein dependent transport system inner membrane protein  34.1 
 
 
275 aa  125  6e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.586316  n/a   
 
 
-
 
NC_007492  Pfl01_5122  binding-protein dependent transport system inner membrane protein  36.29 
 
 
274 aa  124  1e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.026759  normal  0.638371 
 
 
-
 
NC_008148  Rxyl_2915  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
267 aa  124  1e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_6002  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
265 aa  124  2e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.176391  normal 
 
 
-
 
NC_009720  Xaut_0865  binding-protein-dependent transport systems inner membrane component  35.94 
 
 
264 aa  124  2e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1033  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
550 aa  124  2e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.957073  normal 
 
 
-
 
NC_010322  PputGB1_0445  binding-protein-dependent transport systems inner membrane component  35.98 
 
 
275 aa  123  3e-27  Pseudomonas putida GB-1  Bacteria  normal  normal  0.355956 
 
 
-
 
NC_010511  M446_4679  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
287 aa  123  3e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2579  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
277 aa  123  4e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  0.715101  normal 
 
 
-
 
NC_008463  PA14_07900  putative permease of ABC transporter  35.38 
 
 
276 aa  122  5e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00280578 
 
 
-
 
NC_012912  Dd1591_1871  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
278 aa  122  7e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0645  polyamine ABC transporter, permease protein  34.02 
 
 
279 aa  122  8e-27  Burkholderia thailandensis E264  Bacteria  normal  0.637437  n/a   
 
 
-
 
NC_009656  PSPA7_0750  ABC transporter permease  35.85 
 
 
276 aa  121  9.999999999999999e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0448  binding-protein-dependent transport systems inner membrane component  34.58 
 
 
275 aa  120  1.9999999999999998e-26  Pseudomonas putida F1  Bacteria  normal  normal  0.439073 
 
 
-
 
NC_002947  PP_0414  binding-protein-dependent transport systems inner membrane component  34.58 
 
 
275 aa  120  1.9999999999999998e-26  Pseudomonas putida KT2440  Bacteria  normal  0.958357  normal 
 
 
-
 
NC_002947  PP_3816  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
269 aa  120  1.9999999999999998e-26  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0037178  normal  0.4746 
 
 
-
 
NC_009512  Pput_1953  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
268 aa  120  1.9999999999999998e-26  Pseudomonas putida F1  Bacteria  normal  0.911704  normal 
 
 
-
 
NC_011892  Mnod_8490  binding-protein-dependent transport systems inner membrane component  37.19 
 
 
273 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.668545  n/a   
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
269 aa  120  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_014210  Ndas_1923  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
262 aa  120  3e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.438917 
 
 
-
 
NC_010501  PputW619_4788  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
275 aa  120  3e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.776443 
 
 
-
 
NC_010625  Bphy_7052  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
265 aa  120  3e-26  Burkholderia phymatum STM815  Bacteria  normal  normal  0.34418 
 
 
-
 
NC_010623  Bphy_4324  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
279 aa  120  3e-26  Burkholderia phymatum STM815  Bacteria  normal  normal  0.644272 
 
 
-
 
NC_010322  PputGB1_2089  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
268 aa  120  3e-26  Pseudomonas putida GB-1  Bacteria  normal  0.217099  normal 
 
 
-
 
NC_008786  Veis_0786  binding-protein-dependent transport systems inner membrane component  38.59 
 
 
265 aa  120  3e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA1105  polyamine ABC transporter, permease protein  32.39 
 
 
267 aa  119  3.9999999999999996e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2498  putative polyamine ABC transporter, permease protein  33.61 
 
 
289 aa  119  4.9999999999999996e-26  Burkholderia pseudomallei 668  Bacteria  normal  0.633965  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2359  putative polyamine ABC transporter, permease protein  33.61 
 
 
289 aa  119  4.9999999999999996e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0812  polyamine ABC transporter, permease protein  33.61 
 
 
279 aa  119  6e-26  Burkholderia pseudomallei 1710b  Bacteria  normal  0.610714  n/a   
 
 
-
 
NC_013456  VEA_003666  probable permease of ABC transporter  32.13 
 
 
282 aa  119  7e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6885  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
279 aa  118  7.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.471707  normal  0.190136 
 
 
-
 
NC_007952  Bxe_B2930  spermidine/putrescine ABC transporter inner membrane protein  33.33 
 
 
279 aa  118  9.999999999999999e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3243  binding-protein dependent transport system inner membrane protein  31.67 
 
 
269 aa  117  1.9999999999999998e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.796458 
 
 
-
 
NC_008786  Veis_4042  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
278 aa  117  1.9999999999999998e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0448  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
275 aa  117  1.9999999999999998e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_0084  binding-protein-dependent transport systems inner membrane component  27.95 
 
 
272 aa  117  3e-25  Natrialba magadii ATCC 43099  Archaea  normal  0.0395984  n/a   
 
 
-
 
NC_007802  Jann_3073  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
284 aa  117  3e-25  Jannaschia sp. CCS1  Bacteria  normal  0.446798  normal  0.0908777 
 
 
-
 
NC_010501  PputW619_1933  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
269 aa  116  5e-25  Pseudomonas putida W619  Bacteria  normal  normal  0.0161656 
 
 
-
 
NC_012852  Rleg_6034  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
259 aa  115  6e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.958438 
 
 
-
 
NC_014165  Tbis_1588  binding-protein-dependent transporter inner membrane component  36.74 
 
 
279 aa  115  7.999999999999999e-25  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.148375 
 
 
-
 
NC_013923  Nmag_3864  binding-protein-dependent transport systems inner membrane component  27.91 
 
 
279 aa  114  1.0000000000000001e-24  Natrialba magadii ATCC 43099  Archaea  normal  0.623194  n/a   
 
 
-
 
NC_010622  Bphy_2380  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
279 aa  115  1.0000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  0.576146  normal 
 
 
-
 
NC_012791  Vapar_4699  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
272 aa  114  2.0000000000000002e-24  Variovorax paradoxus S110  Bacteria  normal  0.607966  n/a   
 
 
-
 
NC_010571  Oter_3799  ornithine carbamoyltransferase  32.8 
 
 
260 aa  114  2.0000000000000002e-24  Opitutus terrae PB90-1  Bacteria  normal  normal  0.195582 
 
 
-
 
NC_009485  BBta_3185  ABC transporter permease  32.1 
 
 
271 aa  113  3e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
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