Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0414 |
Symbol | |
ID | 1044136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 502968 |
End bp | 503795 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637143793 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | NP_742580 |
Protein GI | 26987155 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.958357 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAGCC CATACATGTC GCCCGTGGAG CGGGTCTGGT TCTACAGCCT GCGTATTCTC TGCGGCTTGA TCCTGCTGTT CCTGATCTTG CCAGTGCTGG TGATCGTGCC GCTGTCGTTC AACAGTGGCA GCTTCCTGGT GTATCCGCTG CAGGGCTTCT CGCTGCAGTG GTATCAGGAC TTCTTCGGCT CGGCCGAATG GATGCGTGCG TTGAAAAACA GCATCATCGT TGCCCCGGCG GCCACGGTGC TGGCCATGGT GTTCGGCACG TTGGCGGCCA TCGGCCTGAC CCGTGGCGAT TTCCCCGGCA AGTCGCTGGT GATGGCGCTG GTGATCTCGC CCATGGTGGT GCCGGTAGTG ATCATCGGGG TGGCCAGTTA CCTGTTCTTC GCCCCTCTGG GTATGGGCAA CAGTTTCACC TCGCTGATTC TGGTGCATGC GGTACTGGGT GTGCCGTTCG TCATCATTAC CGTGTCGGCG ACGCTGCAGG GGTTCAACTA CAATCTGGTG CGTGCGGCGG CCAGCCTGGG CGCTTCACCT CTGCTGGCTT TCCGCCGGGT GACCCTGCCG CTGATTGCGC CCGGTGTCAT CTCGGGAGCC CTGTTTGCCT TTGCCACCTC GTTTGACGAG GTGGTGGTGA CGCTGTTCCT CGCCGGGCCG GAGCAGGCAA CACTGCCGCG GCAGATGTTC AGCGGTATTC GCGAGAACCT GAGCCCGACC ATTGCCGCGG CGGCGACCTT GCTGATTGCG TTCTCGGTGT TGTTGCTGCT GACCCTGGAG TGGTTGCGTG GGCGTAGCGA GAAGCTGAGG ACTCAACAGC CGGCTTGA
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Protein sequence | MLSPYMSPVE RVWFYSLRIL CGLILLFLIL PVLVIVPLSF NSGSFLVYPL QGFSLQWYQD FFGSAEWMRA LKNSIIVAPA ATVLAMVFGT LAAIGLTRGD FPGKSLVMAL VISPMVVPVV IIGVASYLFF APLGMGNSFT SLILVHAVLG VPFVIITVSA TLQGFNYNLV RAAASLGASP LLAFRRVTLP LIAPGVISGA LFAFATSFDE VVVTLFLAGP EQATLPRQMF SGIRENLSPT IAAAATLLIA FSVLLLLTLE WLRGRSEKLR TQQPA
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