| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4699 |
|---|
| Symbol | |
|---|
| ID | 7971709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4989520 |
|---|
| End bp | 4990338 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795284 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_002946570 |
|---|
| Protein GI | 239817660 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.607966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGC TTCCCCAATT CCCGGCCTAT GCCACCTTCG CCGACAAGCT CGGCTGGTGG
GCGGTGCGCG CGGGCTGCAT CGCGGTGCTG GCCTTTCTGC TGGCGCCGAT CCTGGTGGTG
ATTCCGCTGT CGTTCTCCGA CAGCTCGTTC CTGGCCTACC CGATCCGGGG CTGGTCGCTG
CAGTGGTACC GCAACCTCTT CGATTCGCCC GAGTGGGGGC GCGCGGCACG CAACAGCTTC
ATCGTTGCGC CGGCCGCCAC GGTGCTGGCC ACTGTGCTGG GCACGCTGGC GGCGGTGGGG
CTGTCGCGCA CGAGCTTCGC CTTCAAGGGC CTGCTCATGA GCGTGCTGAT CTCGCCGATG
GTGGTGCCGA TCGTGGTGGT GGGCGTCGCC ACGTATCTCT ACTTCGCGCC GCTCGGGCTG
GCCGACACCT ACATCGGGCT GATCGTGGTG CATGCGGCGC TGGGTGCGCC CTTTGTGCTG
ACCACCGTGC TGGCCACGCT GGCGGGCTTC AACCACAACT TGGTGCGTGC ATCGCTGAGC
CTGGGCGAGA CACCGTTCAG AACCTTCATG CGCGTCACGC TGCCGGTGAT TGCGCCGGGC
GTGATCTCGG GTGCGCTGTT CGCCTTTGCC ACCTCGTTCG ACGAAGTGGT GGTCACCTTG
TTCCTCGCGG GGCCCGATCA GGTGACCTTG CCGCGCCAGA TGTTCACCGG CATCCGCGAG
AACATCTCGC CCACCATCGC CGCCGTGGCA ACGCTGCTGA TCGTCTTCAC CACCACGCTG
CTGCTCGCGC TCGAATGGCT GCGCGGCCGG CGGCGCTGA
|
|---|
| Protein sequence | MFKLPQFPAY ATFADKLGWW AVRAGCIAVL AFLLAPILVV IPLSFSDSSF LAYPIRGWSL
QWYRNLFDSP EWGRAARNSF IVAPAATVLA TVLGTLAAVG LSRTSFAFKG LLMSVLISPM
VVPIVVVGVA TYLYFAPLGL ADTYIGLIVV HAALGAPFVL TTVLATLAGF NHNLVRASLS
LGETPFRTFM RVTLPVIAPG VISGALFAFA TSFDEVVVTL FLAGPDQVTL PRQMFTGIRE
NISPTIAAVA TLLIVFTTTL LLALEWLRGR RR
|
|---|
| |