| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0306 |
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| Symbol | |
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| ID | 7972655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 327599 |
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| End bp | 328393 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790909 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002942235 |
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| Protein GI | 239813325 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAGA ACGGCCCCCT CGCCCTCGCG TTCAACGCGC TCGTCATCAC CTTCATGCTG
GCGCCGCTGG TGGTGGTGTG CATCGTCGCG TTCACGCCCG AGAACACGCT GACGATTCCG
ACCACGCACT TCTCGCTGCG CTGGTTCGAG GCGGTGTTCG CGCACCCGGA CTTCATGCAG
TCATTCTGGA ACAGCCTGTG GCTCGCACTG GCTTCGGCCA CCATCGCCAC GCTGCTCGCG
GTGCCGGCCG GCATGGCGAT CACGCGCTAC ACGTTTCCGG GGCGCGACTT CCTCAACGGC
CTGTTCCTCT CGCCGCTGAT CATTCCGCAC CTCGTGCTGG GCGTGGCGCT GCTGCGCCTG
TTCGCGCTGG TGGGCGGCAC GGGCAGCTTC GGCTGGCTGG TGATGGCGCA TGCGCTGATC
GTCACGCCCT ACACGCTGCG GCTCGTGGTG GCCGCGCTGG TGGGCTTCGA CCGCAGCGCC
GAGCAGGCCG CGCTCTCGCT GGGCGCGAGC CAGGCCACGG TGTTCCGGCG CATCACGCTG
CCGATGATCC TGCCGGGCGT GACGGGCGGG TGGCTGCTGT CCTTCATCAA CAGCTTCGAC
GAAGTGACGA TGTCGATCTT CGTCACCTCG CCCAGCACGG TGACGCTGCC GGTGCGCATG
TACATGTATG CCACCGAATC GATCGATCCG CTGATGGCGG CCGTGTCGGC GCTGATGGTG
GCGGTGACGG CCATCGCGAT GGTGGTGCTC GACCGTGTCT ATGGACTGGA CCGCGTGCTG
GTGGGACGCC GATAG
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| Protein sequence | MTKNGPLALA FNALVITFML APLVVVCIVA FTPENTLTIP TTHFSLRWFE AVFAHPDFMQ
SFWNSLWLAL ASATIATLLA VPAGMAITRY TFPGRDFLNG LFLSPLIIPH LVLGVALLRL
FALVGGTGSF GWLVMAHALI VTPYTLRLVV AALVGFDRSA EQAALSLGAS QATVFRRITL
PMILPGVTGG WLLSFINSFD EVTMSIFVTS PSTVTLPVRM YMYATESIDP LMAAVSALMV
AVTAIAMVVL DRVYGLDRVL VGRR
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