| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1953 |
|---|
| Symbol | |
|---|
| ID | 5192785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2223353 |
|---|
| End bp | 2224159 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640586414 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001267280 |
|---|
| Protein GI | 148547178 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.911704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCTGT CTCCCAATGC CATGGGCCGC CCGCTGCGTA CGGGCCTGTA CCTGACCACC
GGGGTCATCG CGGCCTTCCT GCTGCTGCCG GTGGTCTTCA TTGTGTTGCT GTCATTCGGC
TCGTCACAGT GGCTGGTGTT CCCGCCACCG GGCTGGACCT TCAAGTGGTA CGGCCAGTTT
TTCTCCAACC CGGAGTGGAT GGACGCCGCA CTGGCCAGCC TTAAGGTGGC CGTGCTGACC
ACCATCGCCG CCGTGCTGCT GGGCCTGCCC AGCGCATTCG CCCTGGTGCG TGGCCGCTTC
CCGGGCCGCG AGCTGCTGTA CGGGCTGTTT ACCATGCCGA TGATCGTGCC GCTGGTGATC
ATTGCCGTGG CGGTATACGC ACTGTTCCTC AAGCTCGGTT ACACCGGCAC GCTGTTCGCC
TTCGTGGTCA GCCACGTGAT CGTCGCCCTG CCGTTCACGA TCATCTCGAT CATCAACTCG
CTGAAGCTGT TTGACCAGTC GATCGAAGAT GCTGCGGTGA TCTGTGGTGC CTCACGCCTG
CAGGCCATTT TCAAGGTCAC GTTCCCGGCC ATCCGCCCCG GCATGATCGC CGGTGGCCTG
TTCGCTTTCC TGGTGTCCTG GGATGAGGTG GTGCTGAGCG TGATGATGGC CAGCCCCGAC
CTGCAGACCC TGCCAGTGAA GATGTGGACC ACCTTGCGCC AGGACCTTAG CCCGGTCATC
GCCGTGGCTT CGACCTTGCT GATCGGCCTG TCGTTGCTGG TCATGTTCAT TGCCGCCGCC
TTGCGCCGGC GCACCGAAAA CGCCTGA
|
|---|
| Protein sequence | MLLSPNAMGR PLRTGLYLTT GVIAAFLLLP VVFIVLLSFG SSQWLVFPPP GWTFKWYGQF
FSNPEWMDAA LASLKVAVLT TIAAVLLGLP SAFALVRGRF PGRELLYGLF TMPMIVPLVI
IAVAVYALFL KLGYTGTLFA FVVSHVIVAL PFTIISIINS LKLFDQSIED AAVICGASRL
QAIFKVTFPA IRPGMIAGGL FAFLVSWDEV VLSVMMASPD LQTLPVKMWT TLRQDLSPVI
AVASTLLIGL SLLVMFIAAA LRRRTENA
|
|---|
| |